Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MN084_RS10490 Genome accession   NZ_CP099567
Coordinates   1872490..1873074 (-) Length   194 a.a.
NCBI ID   WP_330178018.1    Uniprot ID   -
Organism   Candidatus Vondammii sp. HM_W22     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1867490..1878074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN084_RS10460 kdsB 1867691..1868452 (-) 762 WP_241086452.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MN084_RS10465 - 1868452..1868640 (-) 189 WP_241086451.1 Trm112 family protein -
  MN084_RS10470 lpxK 1868633..1869619 (-) 987 WP_241086450.1 tetraacyldisaccharide 4'-kinase -
  MN084_RS10475 - 1869626..1870051 (-) 426 WP_241086449.1 biopolymer transporter ExbD -
  MN084_RS10480 - 1870058..1870684 (-) 627 WP_241086448.1 MotA/TolQ/ExbB proton channel family protein -
  MN084_RS10485 - 1870756..1872489 (-) 1734 Protein_2064 DNA internalization-related competence protein ComEC/Rec2 -
  MN084_RS10490 comA 1872490..1873074 (-) 585 WP_330178018.1 ComEC/Rec2 family competence protein Machinery gene
  MN084_RS10495 - 1873263..1873784 (+) 522 WP_241086447.1 DUF2062 domain-containing protein -
  MN084_RS10500 lolD 1873806..1874489 (-) 684 WP_241086446.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  MN084_RS10505 - 1874482..1875729 (-) 1248 WP_241086445.1 lipoprotein-releasing ABC transporter permease subunit -
  MN084_RS10510 - 1875851..1876135 (+) 285 WP_241086444.1 hypothetical protein -
  MN084_RS10515 - 1876187..1876324 (-) 138 WP_241086443.1 hypothetical protein -
  MN084_RS10520 - 1877664..1878044 (-) 381 WP_241086442.1 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22241.97 Da        Isoelectric Point: 10.5879

>NTDB_id=700705 MN084_RS10490 WP_330178018.1 1872490..1873074(-) (comA) [Candidatus Vondammii sp. HM_W22]
MIPNTIAFVTGVVLLQWQPSLLPVPFLLLLFLPGFLVWRLPRLRPLACLLLGFLWASLNAHWSMRAELQPALEGPNLQAV
GVIASLPDVNSERIKFEFVIEQLSINSEEFDSPGLVRLSWYRRWPDLQVGDRWQLQLRLKRPHGLMNPGGFDYEGWLFQR
GIRATGYVRFSSDNRRMGEAGSGYLLGRWRAGIR

Nucleotide


Download         Length: 585 bp        

>NTDB_id=700705 MN084_RS10490 WP_330178018.1 1872490..1873074(-) (comA) [Candidatus Vondammii sp. HM_W22]
GTGATACCAAATACTATCGCTTTTGTTACCGGTGTGGTGTTGCTGCAGTGGCAGCCCTCGCTTTTGCCAGTTCCCTTTCT
ACTGCTACTGTTTCTACCCGGTTTTTTGGTCTGGCGCTTACCTCGATTAAGACCTCTGGCCTGTCTCCTGCTGGGATTTC
TTTGGGCTTCACTTAATGCCCATTGGAGTATGAGAGCAGAATTGCAGCCTGCACTGGAAGGACCGAATCTCCAGGCAGTC
GGCGTTATAGCTTCGCTTCCGGACGTCAATTCAGAACGGATCAAATTCGAATTTGTTATCGAACAGCTGAGTATCAACAG
CGAGGAGTTCGACTCCCCCGGATTGGTAAGACTCAGCTGGTACCGTCGGTGGCCTGATCTTCAAGTTGGTGACCGATGGC
AACTGCAGCTTCGGCTTAAGCGCCCGCATGGCTTGATGAACCCGGGTGGATTTGATTATGAGGGCTGGCTTTTTCAGCGG
GGAATTCGGGCGACAGGTTATGTAAGATTTTCTTCCGATAACAGACGGATGGGAGAGGCGGGGTCAGGTTATCTGTTAGG
CCGCTGGCGGGCGGGTATCAGATAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(16-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

42.035

100

0.49