Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PCP45_RS25320 Genome accession   NZ_CP115270
Coordinates   5319295..5319891 (+) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain F019     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5314295..5324891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP45_RS25300 (PCP45_25305) - 5314302..5315594 (-) 1293 WP_043094089.1 site-specific integrase -
  PCP45_RS25305 (PCP45_25310) - 5315884..5316750 (-) 867 WP_023657576.1 substrate-binding periplasmic protein -
  PCP45_RS25310 (PCP45_25315) dnaX 5316787..5318844 (+) 2058 WP_171893006.1 DNA polymerase III subunit gamma/tau -
  PCP45_RS25315 (PCP45_25320) - 5318890..5319216 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  PCP45_RS25320 (PCP45_25325) recR 5319295..5319891 (+) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  PCP45_RS25325 (PCP45_25330) - 5320014..5321162 (+) 1149 WP_003111078.1 acyl-CoA dehydrogenase family protein -
  PCP45_RS25330 (PCP45_25335) - 5321175..5321714 (-) 540 WP_003103931.1 CbrC family protein -
  PCP45_RS25335 (PCP45_25340) - 5321788..5322675 (-) 888 WP_023099751.1 SDR family NAD(P)-dependent oxidoreductase -
  PCP45_RS25340 (PCP45_25345) - 5322672..5324255 (-) 1584 WP_003121915.1 flavin-containing monooxygenase -
  PCP45_RS25345 (PCP45_25350) - 5324378..5324545 (+) 168 Protein_4993 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=700704 PCP45_RS25320 WP_003087237.1 5319295..5319891(+) (recR) [Pseudomonas aeruginosa strain F019]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=700704 PCP45_RS25320 WP_003087237.1 5319295..5319891(+) (recR) [Pseudomonas aeruginosa strain F019]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGTTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGGACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGGATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48