Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   NGX11_RS03460 Genome accession   NZ_CP099556
Coordinates   685990..687831 (-) Length   613 a.a.
NCBI ID   WP_263514879.1    Uniprot ID   -
Organism   Aliarcobacter cryaerophilus strain ICDCAC48     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 680990..692831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGX11_RS03445 (NGX11_03425) - 681448..682575 (+) 1128 WP_066218655.1 iron-containing alcohol dehydrogenase -
  NGX11_RS03450 (NGX11_03430) - 682611..684887 (-) 2277 WP_263514877.1 methyl-accepting chemotaxis protein -
  NGX11_RS03455 (NGX11_03435) - 684966..685997 (-) 1032 WP_263514878.1 alanine racemase -
  NGX11_RS03460 (NGX11_03440) uvrC 685990..687831 (-) 1842 WP_263514879.1 excinuclease ABC subunit UvrC Machinery gene
  NGX11_RS03465 (NGX11_03445) - 687965..690379 (+) 2415 WP_263515051.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 71352.64 Da        Isoelectric Point: 9.2540

>NTDB_id=700689 NGX11_RS03460 WP_263514879.1 685990..687831(-) (uvrC) [Aliarcobacter cryaerophilus strain ICDCAC48]
MNLEEKLKELPNDSGVYQYFDENGHLLYIGKAKVLKNRVKSYFKFTPKLLPADKLSPRIYKMISETTFVEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIYVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGAKDMLDSIYEIVPLVQKKSC
IKGKSACLFYQIGKCKAPCEQKITKEEYKKILDEALSYIYNKSKLLSKLKEKMKIYSDDFRFEDALNLRDRVKTIEKSEI
KTGIDLTTNEDLDIFAIKSGSKKAVIVRMFIRDGKLVSSNYDFIKINDDLEFDLNEAYKRAIVNYYSNELPIIPKEIIVA
DEILDLDDIEEFLYKRFNKKIKVINPKIDKKASIVKIALNNCDELLRIEASKNQTTIYEELKELFCLKTTPSLIESFDNS
HLMGQATVGAMIVWNENLGSFDKKAFRHYNLESKDEYSQMREMLIRRVESFSKNPAPDLWIIDGGETLLKLAFDIVQSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFRKNGEYKSLNLLTSDKRLQFIQRQRDEAHRFAISFHKKQKRKEDKEISFL
QINGIGEAKIKKLLLYFGEFEKIKNASLEELKAVLNEVDSKNIFDYFKKEENG

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=700689 NGX11_RS03460 WP_263514879.1 685990..687831(-) (uvrC) [Aliarcobacter cryaerophilus strain ICDCAC48]
ATGAATTTAGAAGAGAAATTAAAAGAGTTACCAAATGATTCTGGTGTTTATCAATATTTTGATGAAAACGGTCATTTACT
ATATATTGGAAAAGCAAAAGTTTTAAAAAATAGAGTAAAATCTTATTTCAAATTTACTCCAAAACTCTTACCTGCTGATA
AACTAAGTCCACGAATATATAAAATGATTAGTGAAACTACTTTTGTAGAATGGATTGTTGTTCCAAATGAACATGATGCT
TTAATACTTGAAAACTCTTTAATCAAACAGCTAAAACCAAAATACAATGTACTTTTAAGAGATGATAAAACCTATCCATA
TATTTATGTTGATTTAAATGAAGATTTTCCAAGGCTTGAAATAACAAGAAAAATAGAAAAAGGTAAAAATATAAAATATT
TTGGTCCATACTCAAGTGGCGCAAAAGATATGTTAGATAGCATATATGAAATAGTTCCATTGGTACAAAAAAAATCTTGT
ATAAAAGGAAAGAGTGCTTGTCTATTTTACCAAATAGGAAAATGTAAAGCTCCTTGTGAGCAAAAAATAACAAAAGAAGA
GTATAAAAAAATTTTAGATGAAGCTTTAAGCTATATATACAATAAATCAAAACTTTTATCAAAACTAAAAGAGAAGATGA
AAATATATTCAGATGATTTTCGTTTTGAGGATGCTTTAAATTTAAGAGATAGAGTAAAAACTATTGAAAAATCTGAAATT
AAAACAGGAATAGATTTAACAACAAATGAAGATTTGGATATATTTGCTATAAAATCTGGTAGTAAAAAAGCTGTAATTGT
AAGAATGTTTATAAGAGATGGAAAACTTGTATCTTCAAATTATGATTTTATAAAAATAAATGATGATTTAGAGTTTGATT
TAAATGAAGCATATAAAAGAGCAATTGTAAACTACTACTCAAATGAACTTCCAATTATTCCAAAAGAGATTATTGTTGCT
GATGAAATTTTGGATTTAGATGACATTGAAGAGTTTTTATATAAAAGATTTAATAAAAAAATAAAAGTAATAAATCCAAA
AATAGATAAAAAAGCTAGTATTGTAAAGATTGCATTAAACAATTGTGATGAACTTCTAAGAATTGAAGCTTCAAAAAATC
AAACAACTATATATGAAGAGTTAAAAGAACTATTTTGCCTAAAAACAACTCCTAGTTTAATAGAAAGTTTTGACAATTCT
CATTTGATGGGACAAGCAACAGTTGGAGCTATGATTGTTTGGAATGAAAATTTAGGCTCTTTTGATAAAAAAGCTTTTAG
ACACTATAACCTTGAATCAAAAGATGAATATTCACAAATGAGAGAGATGTTAATAAGAAGAGTTGAAAGCTTTTCAAAAA
ATCCTGCTCCTGATTTATGGATTATTGATGGTGGAGAAACTTTGCTAAAACTAGCATTTGATATTGTACAAAGTATTGGG
GTAAATTTAGATATTATTGCAATTTCAAAACAAAAAGTAGATGCCAAAGCATATAGAGCAAAAGGAAATGCGAAAGATAT
AGTCCATTTTAGAAAAAATGGTGAATACAAAAGCTTAAATCTTCTTACAAGTGATAAAAGATTACAGTTTATTCAAAGAC
AAAGAGATGAAGCACATAGATTTGCTATAAGTTTTCATAAAAAACAAAAAAGAAAAGAGGATAAAGAGATATCCTTTTTA
CAAATAAATGGAATAGGTGAAGCAAAAATAAAAAAACTTCTTCTATATTTTGGAGAGTTTGAAAAGATAAAAAATGCAAG
TTTAGAAGAGCTAAAAGCTGTTTTAAATGAAGTTGATTCAAAAAATATATTTGATTATTTTAAAAAGGAAGAGAATGGCT
AG

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-543)

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.51

97.227

0.501