Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NGP02_RS03965 Genome accession   NZ_CP099551
Coordinates   915995..917809 (-) Length   604 a.a.
NCBI ID   WP_050338374.1    Uniprot ID   F6IXG6
Organism   Lactiplantibacillus pentosus strain KW1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 910995..922809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGP02_RS03945 (NGP02_03955) - 912609..913511 (-) 903 WP_050338377.1 RluA family pseudouridine synthase -
  NGP02_RS03950 (NGP02_03960) - 913508..914311 (-) 804 WP_003639098.1 NAD kinase -
  NGP02_RS03955 (NGP02_03965) - 914308..914970 (-) 663 WP_050338376.1 GTP pyrophosphokinase family protein -
  NGP02_RS03960 (NGP02_03970) - 915264..915899 (+) 636 WP_050338375.1 DsbA family protein -
  NGP02_RS03965 (NGP02_03975) pepF 915995..917809 (-) 1815 WP_050338374.1 oligoendopeptidase F Regulator
  NGP02_RS03970 (NGP02_03980) - 917881..918972 (-) 1092 WP_050338373.1 competence protein CoiA -
  NGP02_RS03975 (NGP02_03985) - 919306..920037 (-) 732 WP_003639103.1 adaptor protein MecA -
  NGP02_RS03980 (NGP02_03990) spxA 920173..920571 (-) 399 WP_050338372.1 transcriptional regulator SpxA -
  NGP02_RS03985 (NGP02_03995) - 921085..921828 (-) 744 WP_050338371.1 MBL fold metallo-hydrolase -
  NGP02_RS03990 (NGP02_04000) - 921970..922470 (+) 501 WP_050338370.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67891.07 Da        Isoelectric Point: 5.0704

>NTDB_id=700662 NGP02_RS03965 WP_050338374.1 915995..917809(-) (pepF) [Lactiplantibacillus pentosus strain KW1]
MVATKQLPTRSAVPEELTWDLTPIYATQAAYEADVAQVKAALTAVTALKEHFTDSADTVLAGIQAVLDVYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQASSLTAKVSAATAWFEPAILQLTPDELDTYLDQNVTLRDYRHLLDTVRLQKGHVLSENEES
LLAGASDIFGASAKTFGVLNNADFKFPTVKDDDGNPVTLSQGLYGVLLESVHPAVRREAFEALYRVYSQFRRTLASTLAS
QVKVHNFVAQAHHYPDARAAALAANQIPTSVYDALVTSVDDHLDLLHRYVALRKRLLGVDQLHMYDMYTPLAEKPAIKYT
YQQAQTTALQALKILGPDYIKHVKTAFGSRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHNQPYQYGDYSIFVAEIASTTNENLLTNYFLETEKDPKMRAYVLNYYLDGFKGTVFRQTQFAEFEQWIHEQDQAGQ
ALTADRLSKYYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLAERISSKQPDAVTDYLGYLKAG
SSAFPIDVMHRAGVDMTKPDYLDAAFKVFAERLDEFEQLVTAAQ

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=700662 NGP02_RS03965 WP_050338374.1 915995..917809(-) (pepF) [Lactiplantibacillus pentosus strain KW1]
ATGGTAGCAACCAAACAATTGCCGACCCGTTCAGCCGTTCCTGAAGAACTGACTTGGGATCTGACCCCAATCTACGCCAC
TCAGGCTGCGTATGAAGCGGATGTCGCGCAGGTTAAAGCCGCACTGACAGCTGTGACGGCATTGAAAGAACATTTTACGG
ACTCCGCTGATACCGTATTAGCAGGGATTCAGGCTGTCCTGGATGTTTATCGACGGCTTGAAAAGGTCGCCGTGTACGCG
AGCTTGAAGAGTGACCAGGACACTGGCAACAGCACCAACGCCGCACTCGACGATCAGGCTAGCAGCTTAACGGCCAAGGT
ATCCGCCGCCACTGCCTGGTTTGAACCGGCAATTTTGCAATTAACACCGGATGAACTTGATACTTATTTGGATCAAAACG
TCACATTACGTGATTATCGGCACTTACTCGATACTGTCCGGCTCCAGAAGGGGCACGTTTTATCAGAAAACGAAGAGTCA
TTACTTGCTGGTGCCAGTGATATTTTTGGCGCGTCAGCGAAGACCTTTGGCGTCTTGAACAATGCTGACTTCAAGTTTCC
AACAGTCAAGGATGATGACGGTAACCCAGTGACCCTTTCGCAGGGGTTATATGGCGTGTTGCTAGAATCAGTGCATCCAG
CCGTTCGTCGCGAAGCGTTTGAAGCGTTATACCGGGTTTATAGCCAGTTTCGGCGGACCCTTGCTTCAACCCTAGCGAGT
CAAGTAAAGGTGCATAACTTTGTCGCTCAGGCGCATCACTATCCGGATGCGCGGGCAGCGGCGTTAGCAGCCAACCAGAT
TCCAACGTCAGTTTATGACGCGCTAGTGACATCGGTTGATGACCATCTGGACTTATTACATCGTTACGTGGCCCTCCGTA
AACGGCTGCTGGGGGTAGACCAATTGCATATGTATGATATGTATACACCATTGGCTGAGAAGCCTGCCATCAAATATACT
TATCAGCAAGCCCAGACCACGGCATTACAGGCGTTAAAGATTTTAGGCCCAGATTACATCAAACACGTCAAGACGGCCTT
TGGTTCACGGTGGATCGATGTGGTTGAAAATCAAGGTAAGCGGAGTGGGGCATATTCATCAGGCATGTATGATACGGCGC
CATATATGCTCTTAAATTGGCAAGACAATATCGATAACTTGTACACGCTCGTCCACGAGATGGGACATAGTATGCACTCA
TACTTCACGACCCATAATCAGCCTTATCAGTATGGTGACTATTCGATCTTTGTGGCTGAAATTGCATCGACGACCAACGA
AAACTTGCTGACTAATTATTTCTTGGAGACTGAAAAGGACCCTAAGATGCGGGCGTATGTTTTGAATTACTATCTCGACG
GCTTCAAGGGGACGGTCTTCCGTCAAACGCAATTTGCTGAATTCGAACAATGGATTCATGAACAAGACCAAGCAGGGCAA
GCTTTGACCGCTGACCGGCTATCGAAATACTACTTGCAACTCAATCAACGCTACTACGGTGACGCGGTGGTCAGTGATCC
GCAGATTGCGGATGAATGGTCCCGAATTCCGCATTTCTACTACAACTATTACGTCTACCAGTATGCGACTGGTTTCGCGG
CGGCTTCGACATTGGCTGAACGGATCAGTAGTAAGCAACCAGACGCAGTTACGGATTATCTGGGGTATCTGAAGGCGGGG
TCTTCGGCGTTCCCAATCGATGTGATGCATCGTGCGGGTGTCGATATGACTAAGCCGGATTACTTGGATGCTGCATTCAA
AGTGTTTGCTGAACGCTTGGATGAATTTGAACAATTGGTGACTGCTGCCCAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6IXG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.872

98.013

0.518