Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ALSL_RS09005 Genome accession   NZ_AP018560
Coordinates   1934985..1936358 (-) Length   457 a.a.
NCBI ID   WP_126538456.1    Uniprot ID   A0A2Z6E5N0
Organism   Aerosticca soli strain Dysh456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1929985..1941358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALSL_RS08975 (ALSL_1802) rplS 1930483..1930872 (-) 390 WP_126538445.1 50S ribosomal protein L19 -
  ALSL_RS08980 (ALSL_1803) trmD 1930960..1931712 (-) 753 WP_126538447.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ALSL_RS08985 (ALSL_1804) rimM 1931736..1932251 (-) 516 WP_126538449.1 ribosome maturation factor RimM -
  ALSL_RS08990 (ALSL_1805) rpsP 1932256..1932510 (-) 255 WP_126538451.1 30S ribosomal protein S16 -
  ALSL_RS08995 (ALSL_1806) ffh 1932693..1934072 (-) 1380 WP_126538453.1 signal recognition particle protein -
  ALSL_RS09000 (ALSL_1807) ccsA 1934183..1934983 (+) 801 WP_126538455.1 cytochrome c biogenesis protein CcsA -
  ALSL_RS09005 (ALSL_1808) radA 1934985..1936358 (-) 1374 WP_126538456.1 DNA repair protein RadA Machinery gene
  ALSL_RS09010 (ALSL_1809) - 1936440..1937291 (-) 852 WP_126538458.1 sulfurtransferase -
  ALSL_RS09015 (ALSL_1810) - 1937288..1938087 (-) 800 Protein_1769 CoA pyrophosphatase -
  ALSL_RS09025 (ALSL_1812) - 1938115..1938825 (-) 711 WP_126538462.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  ALSL_RS09030 (ALSL_1813) - 1938972..1939754 (+) 783 WP_126538464.1 enoyl-CoA hydratase-related protein -
  ALSL_RS09035 (ALSL_1814) - 1939802..1940671 (-) 870 WP_126540163.1 DUF1684 domain-containing protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48241.48 Da        Isoelectric Point: 8.0666

>NTDB_id=70065 ALSL_RS09005 WP_126538456.1 1934985..1936358(-) (radA) [Aerosticca soli strain Dysh456]
MAKAKTAYVCADCGAEHSKWQGQCVDCGAWNTLAEIVLQPAKASPATRGSYAGQVAGAARVTPLAEVALGAEARTQTGIG
EFDRVLGGGLVQGSVVLIGGDPGIGKSTLLLQMLGRLGAQLPSVYVTGEESLAQVAARAQRLDLPLAPLHALAETGVERI
LEQAAQARPRVLVIDSIQTLWTELLTAAPGSVSQVRETAARLTRYAKETGTSVFLVGHVTKEGGIAGPRVLEHMVDAVLY
FEGESGSRFRVLRAFKNRFGAVNELGVFAMGEKGLREVPNPSAIFLSAHSGPTPGSAVMVTREGTRPLLVEVQALVDQSS
LGNPRRVALGLEQNRLAMLLAVLHRHGGVAAYDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDKPLPEKTIAFGEVGL
SGEIRPVPNGEERLKEAAQHGFRRAIVPRANAPKKGRVGELEVVGVERLAEALEACR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=70065 ALSL_RS09005 WP_126538456.1 1934985..1936358(-) (radA) [Aerosticca soli strain Dysh456]
ATGGCCAAAGCCAAGACCGCCTACGTGTGCGCCGACTGCGGCGCCGAACACAGCAAGTGGCAGGGCCAGTGCGTGGACTG
CGGCGCGTGGAACACGCTCGCGGAAATCGTGCTGCAGCCGGCCAAGGCATCGCCGGCCACGCGCGGCAGTTACGCCGGAC
AAGTCGCCGGCGCGGCGCGGGTCACGCCGCTCGCCGAGGTGGCGCTCGGCGCCGAGGCGCGCACGCAGACCGGTATCGGC
GAATTCGACCGCGTGCTCGGTGGCGGGCTGGTGCAGGGTTCGGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTC
CACGCTGCTTTTGCAGATGCTCGGCAGGCTCGGCGCGCAACTGCCCAGCGTCTACGTCACCGGCGAGGAATCGCTGGCCC
AGGTCGCCGCCCGCGCGCAGCGGCTCGACCTGCCGCTCGCGCCCCTGCATGCCCTGGCCGAGACCGGTGTCGAGCGCATC
CTGGAACAGGCCGCGCAGGCGCGTCCGCGCGTGTTGGTGATCGATTCGATTCAAACCTTGTGGACGGAACTGCTGACCGC
GGCGCCGGGTTCGGTGAGCCAGGTGCGCGAAACCGCCGCGCGGCTCACCCGCTACGCCAAGGAGACCGGCACCAGCGTGT
TCCTGGTCGGCCACGTGACCAAGGAAGGCGGCATCGCCGGTCCGCGCGTGCTCGAACACATGGTCGATGCGGTGCTGTAT
TTCGAGGGCGAATCGGGCAGCCGCTTCCGCGTGCTGCGCGCATTCAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGT
GTTCGCGATGGGCGAGAAGGGCCTGCGCGAGGTGCCCAATCCCTCGGCGATTTTCCTCTCCGCGCACAGCGGGCCGACGC
CGGGCAGCGCGGTGATGGTCACCCGCGAAGGCACGCGGCCGCTCTTGGTCGAGGTGCAGGCGCTGGTCGATCAATCCTCG
CTCGGCAATCCGCGCCGCGTCGCGCTCGGCCTCGAACAGAACCGGCTCGCCATGCTGCTCGCCGTGCTGCATCGGCACGG
CGGCGTGGCGGCTTACGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGGCCGATCTGC
CGGTGCTGCTTGCCGTGCTGTCCTCGCTGCGCGACAAGCCGCTGCCGGAGAAGACCATCGCCTTCGGCGAGGTCGGTCTG
TCCGGCGAGATCCGTCCGGTGCCCAACGGCGAGGAACGCCTGAAGGAGGCCGCGCAGCACGGCTTTCGCCGCGCCATCGT
GCCGCGCGCCAACGCGCCGAAAAAAGGCCGCGTCGGCGAACTCGAAGTGGTCGGCGTGGAACGCCTGGCCGAGGCGCTGG
AGGCCTGCCGCTGA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(76-149)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z6E5N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.559

99.344

0.492
  radA Streptococcus mitis NCTC 12261

45.154

99.344

0.449
  radA Streptococcus pneumoniae Rx1

45.154

99.344

0.449
  radA Streptococcus pneumoniae D39

45.154

99.344

0.449
  radA Streptococcus pneumoniae R6

45.154

99.344

0.449
  radA Streptococcus pneumoniae TIGR4

45.154

99.344

0.449
  radA Streptococcus mitis SK321

45.154

99.344

0.449

Multiple sequence alignment