Detailed information NTG0700634

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP45_RS06175
• Genome accession: NZ_CP115270
• Coordinates: 1243213..1244217 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F019
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1238213..1249217

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP45_RS06155 (PCP45_06150)	-	1238564..1238773 (+)	210	WP_071538228.1	DUF4224 domain-containing protein	-
PCP45_RS06160 (PCP45_06155)	-	1238783..1239757 (+)	975	WP_020750357.1	tyrosine-type recombinase/integrase	-
PCP45_RS06165 (PCP45_06160)	mutS	1239817..1242396 (+)	2580	WP_003105609.1	DNA mismatch repair protein MutS	-
PCP45_RS06170 (PCP45_06165)	fdxA	1242463..1242786 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PCP45_RS06175 (PCP45_06170)	rpoS	1243213..1244217 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP45_RS06180 (PCP45_06175)	-	1244322..1245215 (-)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP45_RS06185 (PCP45_06180)	-	1245261..1245896 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP45_RS06190 (PCP45_06185)	surE	1245929..1246678 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP45_RS06195 (PCP45_06190)	truD	1246666..1247733 (-)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
PCP45_RS06200 (PCP45_06195)	ispF	1247730..1248203 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP45_RS06205 (PCP45_06200)	fghA	1248274..1249125 (-)	852	WP_003117489.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=700634 PCP45_RS06175 WP_003113871.1 1243213..1244217(-) (rpoS) [Pseudomonas aeruginosa strain F019]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=700634 PCP45_RS06175 WP_003113871.1 1243213..1244217(-) (rpoS) [Pseudomonas aeruginosa strain F019]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653