Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NGM19_RS14385 Genome accession   NZ_CP099548
Coordinates   3008904..3009404 (-) Length   166 a.a.
NCBI ID   WP_005263832.1    Uniprot ID   N9QI79
Organism   Acinetobacter junii strain AJ6079     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3003904..3014404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS14350 (NGM19_14350) - 3003974..3005017 (+) 1044 WP_151690695.1 lipase secretion chaperone -
  NGM19_RS14355 (NGM19_14355) - 3005125..3006099 (+) 975 WP_151690694.1 triacylglycerol lipase -
  NGM19_RS14360 (NGM19_14360) rplS 3006159..3006530 (-) 372 WP_004660214.1 50S ribosomal protein L19 -
  NGM19_RS14365 (NGM19_14365) trmD 3006727..3007467 (-) 741 WP_136695012.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NGM19_RS14370 (NGM19_14370) rimM 3007510..3008058 (-) 549 WP_004951620.1 ribosome maturation factor RimM -
  NGM19_RS14375 (NGM19_14375) rpsP 3008075..3008332 (-) 258 WP_004964546.1 30S ribosomal protein S16 -
  NGM19_RS14380 (NGM19_14380) - 3008473..3008910 (-) 438 WP_005263831.1 type IV pilin protein -
  NGM19_RS14385 (NGM19_14385) comE 3008904..3009404 (-) 501 WP_005263832.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NGM19_RS14390 (NGM19_14390) - 3009404..3013111 (-) 3708 WP_005403303.1 hypothetical protein -
  NGM19_RS14395 (NGM19_14395) - 3013127..3013870 (-) 744 WP_039908592.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18356.44 Da        Isoelectric Point: 9.7161

>NTDB_id=700619 NGM19_RS14385 WP_005263832.1 3008904..3009404(-) (comE) [Acinetobacter junii strain AJ6079]
MRKLSGFTLIELMVVVVIIAILAAIAIPSYQSFIRKNLTAQVQQEMLKLADQLERHKAKNFSYKKFDPKYLYAGTVAMPE
VFVPGGIFNVATSKYKIELKDISRATTENLLTTDNGMVWSMKATPLDLSDGKLYTLLLTSTGVRCKTTASSNVSYSACTG
SGVEQW

Nucleotide


Download         Length: 501 bp        

>NTDB_id=700619 NGM19_RS14385 WP_005263832.1 3008904..3009404(-) (comE) [Acinetobacter junii strain AJ6079]
ATGCGTAAATTATCTGGATTCACTCTAATTGAGTTAATGGTCGTAGTGGTGATTATTGCGATTTTAGCTGCGATAGCAAT
ACCAAGCTATCAAAGCTTTATTCGCAAAAATCTAACGGCTCAAGTTCAGCAAGAAATGTTGAAACTAGCTGATCAATTAG
AGAGACATAAAGCTAAAAATTTCTCTTATAAAAAATTTGATCCTAAATATTTATATGCGGGGACTGTTGCTATGCCTGAA
GTATTTGTACCAGGAGGGATATTTAATGTAGCTACATCCAAATATAAAATTGAGTTAAAAGATATTAGCCGTGCGACTAC
TGAAAATTTACTGACCACAGACAATGGAATGGTTTGGTCAATGAAAGCGACTCCATTAGATTTATCAGACGGAAAGCTAT
ATACATTATTGTTAACAAGTACGGGAGTTCGTTGTAAAACCACGGCGAGTTCAAATGTGTCTTATAGTGCTTGTACTGGA
AGTGGAGTAGAACAATGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-125)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9QI79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

48.256

100

0.5