Detailed information NTG0700606

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP29_RS28720
• Genome accession: NZ_CP115269
• Coordinates: 6092686..6093690 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F020
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6087686..6098690

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP29_RS28695 (PCP29_28690)	-	6087835..6087957 (+)	123	WP_254917905.1	hypothetical protein	-
PCP29_RS28700 (PCP29_28695)	-	6088037..6088246 (+)	210	WP_071538228.1	DUF4224 domain-containing protein	-
PCP29_RS28705 (PCP29_28700)	-	6088256..6089230 (+)	975	WP_031690972.1	tyrosine-type recombinase/integrase	-
PCP29_RS28710 (PCP29_28705)	mutS	6089290..6091869 (+)	2580	WP_003105609.1	DNA mismatch repair protein MutS	-
PCP29_RS28715 (PCP29_28710)	fdxA	6091936..6092259 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PCP29_RS28720 (PCP29_28715)	rpoS	6092686..6093690 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP29_RS28725 (PCP29_28720)	-	6093795..6094688 (-)	894	WP_034044933.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP29_RS28730 (PCP29_28725)	-	6094734..6095369 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP29_RS28735 (PCP29_28730)	surE	6095402..6096151 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP29_RS28740 (PCP29_28735)	truD	6096139..6097206 (-)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
PCP29_RS28745 (PCP29_28740)	ispF	6097203..6097676 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP29_RS28750 (PCP29_28745)	fghA	6097747..6098598 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=700606 PCP29_RS28720 WP_003113871.1 6092686..6093690(-) (rpoS) [Pseudomonas aeruginosa strain F020]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=700606 PCP29_RS28720 WP_003113871.1 6092686..6093690(-) (rpoS) [Pseudomonas aeruginosa strain F020]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGATAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653