Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NGM19_RS06260 Genome accession   NZ_CP099548
Coordinates   1354183..1355229 (-) Length   348 a.a.
NCBI ID   WP_004962745.1    Uniprot ID   A0A0A8JC58
Organism   Acinetobacter junii strain AJ6079     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1349183..1360229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS06230 (NGM19_06230) - 1349391..1349846 (+) 456 WP_004912022.1 phasin family protein -
  NGM19_RS06235 (NGM19_06235) - 1350014..1350286 (+) 273 WP_004878739.1 HU family DNA-binding protein -
  NGM19_RS06240 (NGM19_06240) - 1350426..1352297 (+) 1872 WP_130575174.1 SurA N-terminal domain-containing protein -
  NGM19_RS06245 (NGM19_06245) - 1352358..1353221 (-) 864 WP_004962751.1 YbgF trimerization domain-containing protein -
  NGM19_RS06255 (NGM19_06255) - 1353654..1354136 (-) 483 WP_004962748.1 regulatory protein RecX -
  NGM19_RS06260 (NGM19_06260) recA 1354183..1355229 (-) 1047 WP_004962745.1 recombinase RecA Machinery gene
  NGM19_RS06265 (NGM19_06265) - 1355390..1355818 (-) 429 WP_004962742.1 S4 domain-containing protein -
  NGM19_RS06270 (NGM19_06270) - 1355802..1356506 (-) 705 WP_004962740.1 HAD-IA family hydrolase -
  NGM19_RS06275 (NGM19_06275) - 1356518..1357375 (+) 858 WP_004962737.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NGM19_RS06280 (NGM19_06280) - 1357429..1358160 (+) 732 WP_004912000.1 phosphoglycerate mutase family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37807.24 Da        Isoelectric Point: 5.0312

>NTDB_id=700606 NGM19_RS06260 WP_004962745.1 1354183..1355229(-) (recA) [Acinetobacter junii strain AJ6079]
MDDNKSKALQVALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENSKIAAEIEK
VVREQLLTKNNPEAAPTEDVEEPDFLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=700606 NGM19_RS06260 WP_004962745.1 1354183..1355229(-) (recA) [Acinetobacter junii strain AJ6079]
ATGGATGATAATAAAAGTAAAGCGTTACAAGTTGCGTTAAGCCAGATTGAAAAACAATTTGGCAAAAACACTGTGATGCG
CTTAGGTGACAATACTGTACAAGCAGTTGAAGCTGTATCTACAGGGTCATTAACACTAGATATCGCTTTAGGTATTGGTG
GATTACCAAAAGGTCGTATTATTGAGATTTATGGTCCTGAATCATCTGGTAAAACAACAATGACATTGCAAGCAATTGCT
CAATGTCAAAAAAATGGTGGTACTTGTGCATTCATCGATGCTGAACATGCGCTTGACCCACAATATGCACGCAAATTAGG
CGTTGATATTGACAACCTACTAGTCTCTCAACCCGACAATGGTGAACAAGCGCTTGAAATCGCAGATATGCTCGTTCGTT
CAGGTGCAATTGATTTAATCGTTGTCGACTCAGTTGCAGCATTAACACCAAAAGCTGAAATTGAAGGCGAAATGGGTGAC
TCTCATATGGGCTTACAAGCTCGTTTGATGAGCCAAGCATTACGTAAAATCACTGGTAACGCAAAACGCTCTAACTGTAT
GGTGATCTTCATCAACCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAGTCCAGAAACAACCACAGGTGGTAATGCAC
TTAAATTCTATGCGTCAGTGCGCTTAGATATCCGTCGTATTGGACAAGTTAAAGAAGGCGATGAAATCGTTGGTTCTGAA
ACTAAAGTCAAAGTTGTAAAAAACAAAATGGCACCTCCTTTCCGCGAAGCAGTATTCCAAATCATGTACGGTAAAGGAAC
TAATCAACTAGGTGAGTTAGTAGACCTCGCCGTACAACAAGATATTGTTCAAAAAGCGGGTGCATGGTACTCATACCAAG
GCAACAAAATCGGACAAGGTAAAAACAACGTAATTCGTTATTTTGAAGAGAATTCGAAAATTGCTGCTGAAATTGAGAAG
GTTGTTCGCGAGCAATTACTCACCAAAAACAATCCTGAAGCAGCACCTACAGAAGATGTAGAAGAACCAGATTTTTTAGA
AAGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8JC58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

93.642

99.425

0.931
  recA Acinetobacter baylyi ADP1

92.55

100

0.928
  recA Pseudomonas stutzeri DSM 10701

72.911

99.713

0.727
  recA Vibrio cholerae strain A1552

72.973

95.69

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.973

95.69

0.698
  recA Glaesserella parasuis strain SC1401

68.012

99.713

0.678
  recA Ralstonia pseudosolanacearum GMI1000

70.031

93.966

0.658
  recA Neisseria gonorrhoeae MS11

68.21

93.103

0.635
  recA Neisseria gonorrhoeae MS11

68.21

93.103

0.635
  recA Neisseria gonorrhoeae strain FA1090

68.21

93.103

0.635
  recA Helicobacter pylori strain NCTC11637

62.682

98.563

0.618
  recA Helicobacter pylori 26695

62.391

98.563

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

93.966

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

95.977

0.603
  recA Streptococcus mitis NCTC 12261

59.429

100

0.598
  recA Streptococcus mitis SK321

60.947

97.126

0.592
  recA Streptococcus mutans UA159

58.908

100

0.589
  recA Streptococcus pneumoniae R6

62.883

93.678

0.589
  recA Streptococcus pneumoniae Rx1

62.883

93.678

0.589
  recA Streptococcus pneumoniae D39

62.883

93.678

0.589
  recA Streptococcus pneumoniae TIGR4

62.883

93.678

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

62.195

94.253

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.654

93.103

0.583
  recA Streptococcus pyogenes NZ131

62.154

93.391

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

56.522

99.138

0.56
  recA Lactococcus lactis subsp. cremoris KW2

59.133

92.816

0.549