Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   NGM19_RS02680 Genome accession   NZ_CP099548
Coordinates   577705..578592 (+) Length   295 a.a.
NCBI ID   WP_004916466.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ6079     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 572705..583592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS02655 (NGM19_02655) - 573676..574185 (-) 510 WP_004916485.1 dihydrofolate reductase -
  NGM19_RS02660 (NGM19_02660) thyA 574206..575048 (-) 843 WP_004916477.1 thymidylate synthase -
  NGM19_RS02665 (NGM19_02665) - 575207..575782 (-) 576 WP_004916475.1 xanthine phosphoribosyltransferase -
  NGM19_RS02670 (NGM19_02670) - 575871..576587 (-) 717 WP_004916473.1 DUF3108 domain-containing protein -
  NGM19_RS02675 (NGM19_02675) - 576783..577460 (-) 678 WP_151711325.1 hypothetical protein -
  NGM19_RS02680 (NGM19_02680) tonB2 577705..578592 (+) 888 WP_004916466.1 TonB family protein Machinery gene
  NGM19_RS02685 (NGM19_02685) - 578846..580995 (+) 2150 Protein_517 TonB-dependent siderophore receptor -
  NGM19_RS02690 (NGM19_02690) - 581060..581359 (-) 300 WP_004916464.1 hypothetical protein -
  NGM19_RS02695 (NGM19_02695) ybeY 581371..581856 (-) 486 WP_004916463.1 rRNA maturation RNase YbeY -
  NGM19_RS02700 (NGM19_02700) - 582148..583221 (-) 1074 WP_004916462.1 PhoH family protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33491.02 Da        Isoelectric Point: 8.3911

>NTDB_id=700602 NGM19_RS02680 WP_004916466.1 577705..578592(+) (tonB2) [Acinetobacter junii strain AJ6079]
MWNKINFRSELSSHWWQDSIFVGAVILALLLHLAVLAVQFAMPTPSDTSTKEIAVSIRPSTDKVENADFLAQADQKGSGE
FREAHRMSSDMPSPMQADATTGETEFESLEKIQQKRELKFEEKVLMTVLSWQKQAEQSERKKALEDLQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLSGEVRLMVILNSQGGIRAIRL
IESSGHSVLDEAAKASVRRGAPFGAFDSTMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=700602 NGM19_RS02680 WP_004916466.1 577705..578592(+) (tonB2) [Acinetobacter junii strain AJ6079]
ATGTGGAATAAAATAAATTTTCGTTCGGAGTTGTCATCTCATTGGTGGCAAGACTCAATTTTTGTAGGGGCTGTGATTTT
AGCATTGCTTCTGCATTTGGCTGTGCTTGCGGTACAGTTTGCTATGCCAACTCCATCCGATACCTCCACAAAGGAAATCG
CAGTTTCTATTCGCCCTAGTACCGATAAAGTAGAAAATGCTGATTTTCTCGCTCAAGCCGATCAAAAGGGTTCTGGTGAG
TTTCGAGAAGCACATCGCATGTCGAGTGATATGCCTTCACCTATGCAAGCTGATGCGACTACAGGTGAAACTGAGTTTGA
AAGCTTAGAAAAAATTCAGCAAAAGCGAGAGTTAAAATTTGAAGAAAAAGTTTTAATGACCGTATTGAGCTGGCAGAAAC
AGGCAGAACAAAGCGAGCGTAAAAAAGCCTTAGAGGATTTACAAAGTCAGTTCCAAGCAAAAGCTGCGATGGTTGCTAGT
CTTGAAGCTCAGTATTTACAGCGACAACAAAATTTTAGCCGTAAACAACGGATTAAAACGGTAGATGGTATTCAAGCTAA
ACAGGATGCTTCTGCTGCGTATTTAGATAAATTCCGCCAAAAAGTTGAGCTCTACGGAAATCGCTATTATCCAGATGCTG
CTAAACAACAGCGGTTATCGGGCGAAGTTAGATTAATGGTTATTCTGAACTCACAGGGTGGGATACGTGCAATTCGTTTA
ATTGAGAGTTCGGGGCATTCTGTTTTAGATGAAGCAGCTAAGGCTTCAGTGCGCCGTGGTGCTCCTTTTGGTGCATTTGA
TTCAACGATGAAGAAGGATATTTCTGAATTACGTATCATTCGGACTTGGCGTTTTGATCCCGTGGATGCTGAGTTTGAAG
TGCATTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

77.288

100

0.773