Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   NGM19_RS02170 Genome accession   NZ_CP099548
Coordinates   479679..481904 (-) Length   741 a.a.
NCBI ID   WP_171488077.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ6079     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474679..486904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS02155 (NGM19_02155) - 475622..476776 (+) 1155 WP_252665822.1 IS4 family transposase -
  NGM19_RS02160 (NGM19_02160) - 476829..477704 (-) 876 WP_004958672.1 Hsp33 family molecular chaperone HslO -
  NGM19_RS02165 (NGM19_02165) - 477824..479644 (-) 1821 WP_004958675.1 cation:proton antiporter -
  NGM19_RS02170 (NGM19_02170) priA 479679..481904 (-) 2226 WP_171488077.1 primosomal protein N' Machinery gene
  NGM19_RS02175 (NGM19_02175) gspF 482105..483310 (+) 1206 WP_004957567.1 type II secretion system inner membrane protein GspF -
  NGM19_RS02180 (NGM19_02180) gspG 483334..483771 (+) 438 WP_004916750.1 type II secretion system major pseudopilin GspG -
  NGM19_RS02185 (NGM19_02185) - 484035..484379 (+) 345 WP_087539869.1 hypothetical protein -
  NGM19_RS02190 (NGM19_02190) lnt 484435..485994 (-) 1560 WP_252665823.1 apolipoprotein N-acyltransferase -
  NGM19_RS02195 (NGM19_02195) - 485991..486830 (-) 840 WP_004916742.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84028.81 Da        Isoelectric Point: 8.2872

>NTDB_id=700601 NGM19_RS02170 WP_171488077.1 479679..481904(-) (priA) [Acinetobacter junii strain AJ6079]
MPTENSNAILYRIRVALPVYVYDTFDYTVSAEQYLQAQIGARVSVSFGRQNLIGIITEKVDPNEPFTGQFKLKPITALLD
EDAILDQQVLTLLTWSAQYYQFPIGEVMQSALPALLRQGRALDILFHHWNILTHDDPESLLKRSQKQYDAYQILKLHPHG
ATENILNLSGVETATLKALEKKGLIECQLEAHDFTPMPIQLAQMPLTPNEDQKRAIQQILKAQQRYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLHNCPVILGSATPSIDSYYLVESGKLHLLELNQRAGTAVLPKMHV
IDLKVAKKKNGISQNLIDQIKLTLERKEQVLIFLNRRGYAPVLLCESCGWQANCPHCDAHFTVHSQPYSYLHCHHCGTIN
RLPDECPACKHQTLKSIGAGTAKVEEQLHELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDSGLLSVDPRAPERTAQLIIQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEQDYRAVAKQMLSERKVAML
PPYRYAVLVRVESKDRDYSQQFLMEAAQGLSAIAADIIEIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=700601 NGM19_RS02170 WP_171488077.1 479679..481904(-) (priA) [Acinetobacter junii strain AJ6079]
ATGCCTACCGAAAATTCTAACGCTATTCTTTACCGTATTCGAGTTGCATTACCCGTCTATGTGTATGACACGTTTGACTA
TACGGTCAGTGCAGAGCAATACCTGCAAGCTCAAATAGGCGCACGTGTTTCTGTTTCATTTGGTCGCCAAAATCTGATCG
GTATCATTACTGAGAAAGTTGATCCAAATGAGCCGTTTACAGGGCAATTCAAACTTAAACCGATTACAGCACTTCTTGAT
GAAGATGCTATCTTAGACCAACAAGTTTTAACTTTGTTGACATGGTCTGCGCAGTATTATCAATTCCCGATTGGTGAAGT
GATGCAAAGTGCACTTCCTGCACTCTTAAGACAGGGTCGTGCTTTAGATATCTTATTTCACCACTGGAATATTCTCACGC
ATGACGATCCAGAATCTTTATTAAAACGTTCTCAAAAGCAATACGATGCCTATCAGATTCTAAAACTTCATCCACATGGT
GCTACCGAAAATATTTTAAATCTTAGTGGTGTAGAAACTGCAACATTAAAAGCATTGGAAAAAAAGGGACTGATTGAATG
TCAGCTTGAAGCTCATGACTTTACACCGATGCCTATACAACTTGCACAAATGCCTTTAACGCCGAACGAAGATCAAAAGC
GAGCAATCCAACAAATACTCAAAGCTCAACAACGTTACCAAGCCTTTTTACTAGATGGACTTACAGGCAGTGGTAAAACC
GAAGTCTATTTGCAAGTAATGCATGAGGTCCTAAAGCAAGGTAAACAAGTTTTGGTGTTGGTGCCTGAAATTGGTTTGAC
ACCTCAAACGGTCGCACGCTTCAAATCTCGTTTTCATTGCGATGTTGCTTTACTGCACTCGGGACTTAATGATTCAAAAC
GTTTGCAAGCTTGGCAACATGCACAAACTGGTAAAGCATCTATCATCATTGGAACGCGTTCTGCGATTTACACCCCTTTG
CCGCATCTAGGTTTGATCATTTTAGATGAAGAACACGATCTCTCTTATAAACAACAAGAGGGTTTCCGTTATCACACTCG
TGATGTCGCCCTTTATCGTGGTCATTTACACAATTGCCCTGTGATTTTGGGTTCTGCTACACCAAGTATTGATAGTTATT
ATCTAGTGGAGTCTGGTAAATTGCATTTACTTGAACTCAATCAACGTGCTGGAACTGCGGTCTTACCGAAAATGCATGTG
ATTGATCTAAAAGTAGCAAAGAAGAAAAATGGCATCAGTCAAAACCTAATTGATCAAATTAAATTAACTTTAGAGCGCAA
AGAACAGGTTCTTATCTTTCTAAACCGTCGAGGTTACGCTCCTGTTTTACTATGTGAAAGTTGTGGGTGGCAAGCAAACT
GCCCACATTGTGATGCACATTTCACTGTACATTCACAGCCTTATTCTTATTTACACTGTCATCATTGCGGTACGATCAAT
CGCCTGCCAGACGAATGCCCTGCTTGTAAACATCAAACCTTAAAAAGCATTGGTGCTGGAACTGCAAAAGTTGAAGAACA
GTTACACGAGTTATTCCCCCATCATGAAGTAATTCGGGTAGATCGTGACAGTACAAGTCGTGTGGGTAGTTGGCAAAAAA
TCTATGATCGAATTCAACAGAATAAACCAAGCATCTTGTTAGGTACTCAAATGCTGGCGAAGGGACATCATTTCCCACAC
GTCACATTAGTCGCTATTCTGGATATCGACTCAGGATTATTAAGCGTAGACCCAAGAGCACCTGAGCGCACAGCACAATT
AATCATACAAGTTGCAGGACGTGCAGGACGTGGTGAACATAAAGGCAGCGTATATTTACAAAGTTTAAGACCCGATCATC
CAATGCTCACAACCTTGATTGAACAAGACTATCGTGCCGTTGCAAAACAGATGCTGAGTGAACGTAAAGTTGCGATGTTA
CCGCCTTATCGTTACGCTGTTTTAGTCCGTGTGGAGTCGAAAGATCGTGATTATAGTCAACAGTTTTTAATGGAAGCAGC
ACAAGGCTTAAGCGCTATTGCAGCAGATATTATTGAAATTTGGGGACCTATTCCTGCCCCAATGGAACGCAAAGCAGGGC
GTTATCGAGCGCATATGGTGATTTTATCTGCCGACCGAGCAAAACTGCATTTTTATTTACGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGCCAACATCAACTCAGATTATCAATTGATGTTGATCCACAAGAGTTTAGTTGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(210-369)

Helicase conserved C-terminal domain (Helicase_C)

(532-598)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.055

99.73

0.808