Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP29_RS25980 Genome accession   NZ_CP115269
Coordinates   5537822..5538151 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain F020     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5532822..5543151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP29_RS25965 (PCP29_25965) uvrB 5534209..5536221 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  PCP29_RS25970 (PCP29_25970) - 5536409..5537605 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  PCP29_RS25980 (PCP29_25980) comEA/comE1 5537822..5538151 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  PCP29_RS25985 (PCP29_25985) - 5538342..5540339 (-) 1998 WP_010895647.1 polysaccharide biosynthesis protein -
  PCP29_RS25990 (PCP29_25990) - 5540904..5542012 (-) 1109 Protein_5127 IS3 family transposase -
  PCP29_RS25995 (PCP29_25995) - 5542090..5543109 (-) 1020 WP_003113413.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=700601 PCP29_RS25980 WP_003104586.1 5537822..5538151(-) (comEA/comE1) [Pseudomonas aeruginosa strain F020]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=700601 PCP29_RS25980 WP_003104586.1 5537822..5538151(-) (comEA/comE1) [Pseudomonas aeruginosa strain F020]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385