Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   NGM19_RS01680 Genome accession   NZ_CP099548
Coordinates   368507..368833 (+) Length   108 a.a.
NCBI ID   WP_004958548.1    Uniprot ID   A0A8I0S2H5
Organism   Acinetobacter junii strain AJ6079     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 363507..373833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS01655 (NGM19_01655) hemC 363962..364879 (+) 918 WP_125272412.1 hydroxymethylbilane synthase -
  NGM19_RS01660 (NGM19_01660) - 364881..365657 (+) 777 WP_125272411.1 uroporphyrinogen-III synthase -
  NGM19_RS01665 (NGM19_01665) - 365654..366484 (+) 831 WP_125272410.1 hypothetical protein -
  NGM19_RS01670 (NGM19_01670) - 366491..367684 (+) 1194 WP_004957381.1 hypothetical protein -
  NGM19_RS01675 (NGM19_01675) - 367693..368124 (+) 432 WP_004957383.1 thioesterase family protein -
  NGM19_RS01680 (NGM19_01680) hns 368507..368833 (+) 327 WP_004958548.1 H-NS histone family protein Regulator
  NGM19_RS01685 (NGM19_01685) gspN 369014..369757 (+) 744 WP_039046893.1 type II secretion system protein N -
  NGM19_RS01690 (NGM19_01690) - 369757..370605 (+) 849 WP_252665809.1 type II secretion system protein N -
  NGM19_RS01695 (NGM19_01695) gspD 370647..372902 (+) 2256 WP_004957392.1 type II secretion system secretin GspD -
  NGM19_RS01700 (NGM19_01700) - 372966..373577 (+) 612 WP_125272407.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12343.00 Da        Isoelectric Point: 5.0355

>NTDB_id=700597 NGM19_RS01680 WP_004958548.1 368507..368833(+) (hns) [Acinetobacter junii strain AJ6079]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAENVGYSVEELLELGEQKRKKTTRKAVEPRYRNKNNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=700597 NGM19_RS01680 WP_004958548.1 368507..368833(+) (hns) [Acinetobacter junii strain AJ6079]
ATGAAACCAGATATTAGTGATTTATCTGTTGAAGATCTCAAGCGTTTGCAAGCTGAAGCTGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAAACGTTGGATACAGCGTTGAAGAGCTTT
TGGAGCTTGGTGAGCAAAAACGTAAGAAAACAACCCGTAAAGCTGTTGAGCCGCGTTACCGTAATAAAAATAATGCAGAA
GAAACTTGGACAGGTCGCGGTAAGCAACCACGTTGGTTAGTTGCAGAATTAGAGAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

90.741

100

0.907