Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NGM19_RS01530 Genome accession   NZ_CP099548
Coordinates   338286..339851 (-) Length   521 a.a.
NCBI ID   WP_252665804.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ6079     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 333286..344851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS01515 (NGM19_01515) gpmI 334064..335608 (+) 1545 WP_004957318.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  NGM19_RS01520 (NGM19_01520) - 335618..336793 (+) 1176 WP_212387878.1 S41 family peptidase -
  NGM19_RS01525 (NGM19_01525) pilR 336833..338263 (-) 1431 WP_252665802.1 sigma-54 dependent transcriptional regulator Regulator
  NGM19_RS01530 (NGM19_01530) pilS 338286..339851 (-) 1566 WP_252665804.1 ATP-binding protein Regulator
  NGM19_RS01535 (NGM19_01535) - 339867..340502 (-) 636 WP_004957336.1 response regulator -
  NGM19_RS01540 (NGM19_01540) pbpG 340715..341776 (+) 1062 WP_252665806.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  NGM19_RS01545 (NGM19_01545) - 341939..342554 (+) 616 Protein_299 hypothetical protein -
  NGM19_RS01550 (NGM19_01550) - 342578..343357 (+) 780 WP_252665808.1 hypothetical protein -
  NGM19_RS01555 (NGM19_01555) thrC 343424..344563 (-) 1140 WP_002048893.1 threonine synthase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59347.41 Da        Isoelectric Point: 6.7356

>NTDB_id=700595 NGM19_RS01530 WP_252665804.1 338286..339851(-) (pilS) [Acinetobacter junii strain AJ6079]
MLGKIASSVSQTVYKLGIWYSGYRLIISISLLLIYILTAEQLASDYDYPFLYFYTLICFIAFSIFQLFLLKILPVQVTKQ
LILIFLIDVICLALITFSAGGPNLQLSLLYVIVIFSSAILLNSQLSLIVTLFAVIMVVYQRFIGDFFNYNNLNHLSNSIF
LAFLFFVVHAIGRIAVHRFKILEILTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLSNPAANTLLGINVPVSTE
KTPLIKWQPDLFELIKFSELKDGEEFSFESQLSPYTVNVRVKHLIVPEQPLFLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKGSDIHQQDMLSRMISKQAKRIDSIIQDTLGMARNKPTEPQIIQLTEFFETLLNEDLADVK
SKIRISLPENLTIMFDEKQLRQVLINLIRNAIRHNAPEAEYIEVNIHLNDGRTRIDVIDFGTGVAKRDISQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLNYIEQQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=700595 NGM19_RS01530 WP_252665804.1 338286..339851(-) (pilS) [Acinetobacter junii strain AJ6079]
ATGCTGGGCAAAATAGCCTCTTCCGTCTCCCAAACTGTCTATAAGCTCGGTATTTGGTATAGTGGCTATCGGCTGATTAT
CTCTATCAGCCTTTTGCTCATTTATATATTAACAGCTGAGCAATTAGCCTCAGATTATGATTACCCTTTTTTATATTTCT
ATACACTGATTTGCTTCATTGCATTTAGTATTTTCCAGCTTTTTTTACTCAAAATACTTCCAGTACAAGTCACTAAACAG
CTCATTTTAATTTTTCTTATTGATGTGATTTGTTTAGCGTTGATTACTTTCTCTGCGGGGGGGCCAAACTTACAATTAAG
TTTGCTGTACGTAATCGTAATCTTTTCTTCTGCAATTCTACTAAACTCTCAGCTCTCGCTGATCGTGACACTTTTTGCTG
TCATTATGGTGGTTTATCAACGTTTTATTGGCGATTTCTTTAACTACAATAACTTAAATCATTTAAGTAATAGTATCTTT
CTCGCTTTTTTATTCTTTGTTGTGCATGCGATTGGACGTATTGCAGTACACCGTTTTAAAATTTTGGAAATATTAACATT
CCATCAATCCATAGAGATTCATCAACTTCAAAATATCAACCGCTACATCCTTGAACAGATTGAAGATGGTTATCTCGTTC
TAGATGAAAGTAACCATATTGTTTTAAGCAATCCTGCTGCGAATACTTTACTTGGAATTAACGTTCCTGTTTCTACTGAG
AAAACACCTTTAATAAAATGGCAACCCGATCTTTTTGAGCTGATCAAATTTAGTGAGCTAAAAGATGGTGAGGAATTTAG
TTTTGAATCACAACTTAGCCCATACACGGTCAATGTTCGAGTCAAACATTTAATTGTTCCTGAACAACCCCTATTCTTAT
TGATCCTGAAAGATGCCCAAAAACTTACTCAACAGGTTCAACAATTAAAATTGGCGGCTTTAGGACAACTTTCTGCAAGT
ATTGCACACGAAATCAGAAATCCACTTGCAGCTATTGTACAAGCCAATGAATTACTTAAGGGTAGCGATATCCATCAGCA
AGACATGCTATCCCGAATGATTAGCAAACAGGCAAAAAGGATCGATAGCATCATTCAAGATACTCTGGGAATGGCACGTA
ATAAACCTACTGAACCACAAATTATTCAATTAACAGAATTTTTTGAAACATTATTAAATGAAGATTTAGCAGATGTTAAA
TCTAAGATCCGAATCAGTTTGCCTGAAAATTTAACGATCATGTTTGATGAAAAACAATTAAGACAAGTATTAATCAATCT
TATTCGTAATGCTATAAGACACAATGCACCTGAAGCAGAATATATTGAAGTGAATATTCATCTAAATGATGGTCGCACCC
GAATAGATGTGATTGATTTTGGTACAGGCGTTGCAAAAAGAGATATTTCTCAGTTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTTTGTGAGGCAAATCATGCAAAGCTCAATTATATAGAGCA
ACAACAAGGAGCATGTTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

64.922

99.04

0.643