Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NG830_RS07985 Genome accession   NZ_CP099542
Coordinates   1667378..1668760 (+) Length   460 a.a.
NCBI ID   WP_028724603.1    Uniprot ID   A0AAJ1CWQ8
Organism   Pantoea ananatis strain JT8-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1662378..1673760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG830_RS07955 (NG830_07950) rsmC 1662823..1663854 (-) 1032 WP_047715048.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  NG830_RS07960 (NG830_07955) - 1663960..1664370 (+) 411 WP_028724599.1 DNA polymerase III subunit psi -
  NG830_RS07965 (NG830_07960) rimI 1664342..1664782 (+) 441 WP_028724600.1 ribosomal protein S18-alanine N-acetyltransferase -
  NG830_RS07970 (NG830_07965) yjjG 1664802..1665482 (+) 681 WP_064366167.1 pyrimidine 5'-nucleotidase -
  NG830_RS07975 (NG830_07970) - 1665611..1666279 (-) 669 WP_028724602.1 YtjB family periplasmic protein -
  NG830_RS07980 (NG830_07975) serB 1666387..1667364 (+) 978 WP_014595282.1 phosphoserine phosphatase -
  NG830_RS07985 (NG830_07980) radA 1667378..1668760 (+) 1383 WP_028724603.1 DNA repair protein RadA Machinery gene
  NG830_RS07990 (NG830_07985) nadR 1668853..1670091 (+) 1239 WP_028724604.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  NG830_RS07995 (NG830_07990) - 1670417..1671349 (+) 933 WP_064366168.1 winged helix-turn-helix domain-containing protein -
  NG830_RS08000 (NG830_07995) - 1671346..1671795 (+) 450 WP_028724606.1 hypothetical protein -
  NG830_RS08005 (NG830_08000) - 1672037..1672591 (+) 555 WP_064366169.1 fimbrial protein -
  NG830_RS08010 (NG830_08005) - 1672631..1673320 (+) 690 WP_064366170.1 molecular chaperone -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49437.09 Da        Isoelectric Point: 7.6663

>NTDB_id=700536 NG830_RS07985 WP_028724603.1 1667378..1668760(+) (radA) [Pantoea ananatis strain JT8-6]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAQTMKTLYVTGEESLQQVAMRAHRLGLPTENLNMLSETSIE
QICLIAEQEAPQIMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIEGMRVYSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=700536 NG830_RS07985 WP_028724603.1 1667378..1668760(+) (radA) [Pantoea ananatis strain JT8-6]
TTGGCCAAAGCGGCAAAACGCGCATTTGTTTGTAACGAGTGTGGCGCAGATTATCCGCGCTGGCAGGGGCAATGCAGCGC
CTGTCACGCCTGGAACACCATTACCGAGGTACGGATTGCCGCCTCACCCGCTGCAGCGCGCAATGAGCGCCTCAGCGGTT
ATGCGGGCAGTGCCGGGACCAGTCGGGTGCAAAAGCTGTCCGAAATCAGTCTGGAAGCCTTGCCCCGTTTCTCGACCAGC
TTTAAAGAATTTGACCGTGTGCTGGGCGGTGGCGTGGTGCCCGGCAGTGCCATTCTGATTGGTGGTAATCCCGGGGCCGG
TAAATCCACTTTGTTGCTGCAGGTCATGTGCCGCTTAGCGCAGACCATGAAAACCCTGTATGTCACCGGCGAAGAATCCT
TACAGCAGGTGGCAATGCGCGCCCATCGGCTGGGTTTGCCGACTGAAAACCTCAACATGCTGTCGGAAACCAGCATAGAA
CAGATCTGTCTGATCGCTGAGCAGGAAGCGCCGCAAATCATGGTCATCGACTCCATCCAGGTGATGCACATGGCTGATAT
CCAGTCTTCACCCGGCAGCGTGGCCCAGGTGCGAGAAACCGCCGCTTATCTGACGCGCTTTGCCAAAACCCGCGGCGTGG
CGATTATCATGGTGGGCCACGTCACCAAAGACGGATCGCTGGCCGGGCCGAAGGTCCTTGAGCACTGTATTGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCTTGCGCAGCCATAAAAACCGTTTTGGTGCCGTGAATGAACT
GGGGGTTTTTGCCATGACCGAGCAGGGCATGCGTGAGGTGAGCAATCCTTCGGCCATTTTCCTGTCGCGCGGTGAAGAGA
TTACATCGGGCAGTTCGGTCATGGTGCTGTGGGAAGGAACCCGGCCATTGCTGGTCGAGATTCAGGCGCTGGTGGACCAT
TCGATGATGGGGAATCCCCGACGTGTTGCCGTTGGGCTTGAACAAAACCGCCTGGCGATTCTGCTGGCGGTACTGCATCG
TCATGGTGGATTGCAAATGGCGGATCAGGATGTGTTCGTCAACGTCGTGGGCGGCGTGAAAGTCACAGAAACCAGCGCCG
ACCTGGCGCTGATGCTGTCAATGGTTTCCAGCCTGCGCGATCGCCCCTTGCCGCAGGATCTGGTTATCTTTGGCGAAGTC
GGGCTGGCCGGCGAAATTCGTCCGGTACCCAGCGGTCAGGAACGGATCTCAGAAGCGGCGAAACATGGCTTCAAACGGGC
GATTGTGCCTGCGGGTAACGCGCCGAAAAAGCCGATTGAGGGCATGCGCGTCTACAGCGCGAAAAAGCTGGCGGATGCGC
TGGCGATTCTCGATGATCTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(87-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.487
  radA Streptococcus mitis NCTC 12261

43.516

98.913

0.43
  radA Streptococcus pneumoniae Rx1

44.78

93.696

0.42
  radA Streptococcus pneumoniae D39

44.78

93.696

0.42
  radA Streptococcus pneumoniae R6

44.78

93.696

0.42
  radA Streptococcus pneumoniae TIGR4

44.78

93.696

0.42
  radA Streptococcus mitis SK321

44.78

93.696

0.42