Detailed information NTG0700504

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP43_RS28500
• Genome accession: NZ_CP115267
• Coordinates: 6043763..6044767 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F021
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6038763..6049767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP43_RS28485 (PCP43_28485)	-	6039246..6040253 (+)	1008	WP_012613731.1	TolB family protein	-
PCP43_RS28490 (PCP43_28490)	mutS	6040379..6042946 (+)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
PCP43_RS28495 (PCP43_28495)	fdxA	6043013..6043336 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PCP43_RS28500 (PCP43_28500)	rpoS	6043763..6044767 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP43_RS28505 (PCP43_28505)	-	6044872..6045765 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP43_RS28510 (PCP43_28510)	-	6045811..6046446 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP43_RS28515 (PCP43_28515)	surE	6046479..6047228 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP43_RS28520 (PCP43_28520)	truD	6047216..6048283 (-)	1068	WP_023087103.1	tRNA pseudouridine(13) synthase TruD	-
PCP43_RS28525 (PCP43_28525)	ispF	6048280..6048753 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP43_RS28530 (PCP43_28530)	fghA	6048824..6049675 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=700504 PCP43_RS28500 WP_003113871.1 6043763..6044767(-) (rpoS) [Pseudomonas aeruginosa strain F021]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=700504 PCP43_RS28500 WP_003113871.1 6043763..6044767(-) (rpoS) [Pseudomonas aeruginosa strain F021]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653