Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PCP43_RS25160 Genome accession   NZ_CP115267
Coordinates   5325832..5326188 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain F021     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5320832..5331188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP43_RS25135 (PCP43_25135) - 5321198..5321830 (-) 633 WP_023087171.1 DUF4823 domain-containing protein -
  PCP43_RS25140 (PCP43_25140) - 5321895..5322791 (-) 897 WP_023087170.1 radical SAM protein -
  PCP43_RS25145 (PCP43_25145) - 5322958..5323596 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  PCP43_RS25150 (PCP43_25150) - 5323682..5324815 (+) 1134 WP_329006282.1 aminotransferase class V-fold PLP-dependent enzyme -
  PCP43_RS25155 (PCP43_25155) - 5325041..5325817 (-) 777 WP_003091117.1 TatD family hydrolase -
  PCP43_RS25160 (PCP43_25160) pilZ 5325832..5326188 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  PCP43_RS25165 (PCP43_25165) - 5326222..5327208 (-) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  PCP43_RS25170 (PCP43_25170) tmk 5327201..5327833 (-) 633 WP_003091125.1 dTMP kinase -
  PCP43_RS25175 (PCP43_25175) mltG 5327862..5328911 (-) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  PCP43_RS25180 (PCP43_25180) pabC 5328917..5329732 (-) 816 WP_023087169.1 aminodeoxychorismate lyase -
  PCP43_RS25185 (PCP43_25185) fabF 5329732..5330976 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=700491 PCP43_RS25160 WP_003091119.1 5325832..5326188(-) (pilZ) [Pseudomonas aeruginosa strain F021]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=700491 PCP43_RS25160 WP_003091119.1 5325832..5326188(-) (pilZ) [Pseudomonas aeruginosa strain F021]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449