Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NG824_RS05905 Genome accession   NZ_CP099534
Coordinates   1317451..1318836 (+) Length   461 a.a.
NCBI ID   WP_017914782.1    Uniprot ID   A0AA46YAR3
Organism   Xanthomonas sacchari strain JR3-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1312451..1323836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG824_RS05880 (NG824_05870) cyoD 1312452..1312790 (+) 339 WP_267093686.1 cytochrome o ubiquinol oxidase subunit IV -
  NG824_RS05885 (NG824_05875) - 1312896..1313702 (-) 807 WP_267093687.1 sigma-70 family RNA polymerase sigma factor -
  NG824_RS05890 (NG824_05880) - 1313758..1314360 (+) 603 WP_267093688.1 ATP-dependent Clp protease proteolytic subunit -
  NG824_RS05895 (NG824_05885) - 1314515..1316383 (+) 1869 WP_267094143.1 tetratricopeptide repeat protein -
  NG824_RS05900 (NG824_05890) - 1316609..1317145 (+) 537 WP_267093689.1 adenylate kinase -
  NG824_RS05905 (NG824_05895) radA 1317451..1318836 (+) 1386 WP_017914782.1 DNA repair protein RadA Machinery gene
  NG824_RS05910 (NG824_05900) - 1319134..1320438 (-) 1305 WP_267093690.1 jacalin-like lectin -
  NG824_RS05915 (NG824_05905) - 1320548..1321849 (-) 1302 WP_267093691.1 histidine-type phosphatase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48431.65 Da        Isoelectric Point: 7.4579

>NTDB_id=700469 NG824_RS05905 WP_017914782.1 1317451..1318836(+) (radA) [Xanthomonas sacchari strain JR3-14]
MAKAKTAYVCGECGAEYNKWQGQCTECGAWNSLSEIVLESAATAKAPAAARRSGWAGKAETPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMAGTLPVLYVTGEESLGQVAGRAVRLDLPLDGLNALAETGI
EHILQHASAARPKLIVADSVQTLWTEALTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSAHQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGTVKGMEVIAVERLAQALEAASE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=700469 NG824_RS05905 WP_017914782.1 1317451..1318836(+) (radA) [Xanthomonas sacchari strain JR3-14]
ATGGCGAAAGCGAAAACGGCCTATGTCTGCGGCGAGTGCGGCGCCGAATACAACAAGTGGCAGGGCCAGTGCACCGAATG
CGGCGCCTGGAACTCGCTGAGCGAGATCGTGCTGGAGAGCGCGGCCACGGCCAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGGCCGAGACGCCTAAGATCACCGCGCTCAAGGACGTGGAGCACCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGACCGGGTGCTCGGCGGCGGCCTGGTCGAGGGCGCGGTGGTGCTGATCGGCGGCGACCCCGGCAT
CGGCAAATCGACCCTGCTGCTGCAGGCGCTGGCGAAGATGGCCGGCACGCTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTGGGCCAGGTCGCCGGGCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAACGCGCTGGCCGAGACCGGCATC
GAGCACATCCTGCAGCACGCCAGCGCGGCGCGGCCCAAGCTGATCGTCGCCGACTCGGTGCAGACCCTGTGGACCGAGGC
GCTGACCGCCGCGCCGGGTTCGGTCAGCCAGGTGCGCGAGAGTGCCGCGCGCCTGGTGCGCTATGCCAAGGAGACCGGCA
CGGCGGTGTTCCTGGTCGGCCACGTCACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGCTGTATTTCGAGGGCGAGAGCGGCAGCCGCTTCCGCCTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGA
ACTGGGCGTGTTCGCGATGGGCGAGAAGGGGCTGAAGGAAGTCTCCAACCCGTCGGCGATCTTCCTGTCCGGCGGCAGCG
CGCACCAGCCCGGCAGTTGCGTGATGGTCACCCGCGAAGGCACCCGGCCACTCATGGTGGAAGTGCAGGCGCTGGTGGAT
GCCTCGCCGCTGTCCAATCCGCGGCGCGTGGCGGTGGGCCTGGAACAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCA
CCGCCATGGCGGCATCGTGGTCGGCGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGACCTGCCGGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGATCGGCCGTTGGCGGAAAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGCGAGATCCGCCCGGTGCCCAATGGCGAGGACCGGCTGCGCGAGGCGGCCACGCACGGCTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGTACGGTCAAGGGCATGGAGGTGATCGCAGTGGAGCGCCTGGCGC
AGGCGCTGGAAGCGGCGAGCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

AAA domain (AAA_25)

(88-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.807

100

0.488
  radA Streptococcus mitis SK321

43.573

99.566

0.434
  radA Streptococcus pneumoniae D39

43.107

99.132

0.427
  radA Streptococcus pneumoniae TIGR4

43.107

99.132

0.427
  radA Streptococcus mitis NCTC 12261

43.107

99.132

0.427
  radA Streptococcus pneumoniae R6

43.107

99.132

0.427
  radA Streptococcus pneumoniae Rx1

43.107

99.132

0.427