Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NG827_RS15165 Genome accession   NZ_CP099533
Coordinates   3618704..3620089 (-) Length   461 a.a.
NCBI ID   WP_017914782.1    Uniprot ID   A0AA46YAR3
Organism   Xanthomonas sacchari strain LT6-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3613704..3625089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG827_RS15155 (NG827_15140) - 3615690..3616991 (+) 1302 WP_267096951.1 histidine-type phosphatase -
  NG827_RS15160 (NG827_15145) - 3617101..3618405 (+) 1305 WP_152180447.1 jacalin-like lectin -
  NG827_RS15165 (NG827_15150) radA 3618704..3620089 (-) 1386 WP_017914782.1 DNA repair protein RadA Machinery gene
  NG827_RS15170 (NG827_15155) - 3620395..3620931 (-) 537 WP_267096952.1 adenylate kinase -
  NG827_RS15175 (NG827_15160) - 3621157..3623025 (-) 1869 WP_267098689.1 tetratricopeptide repeat protein -
  NG827_RS15180 (NG827_15165) - 3623181..3623783 (-) 603 WP_267096953.1 ATP-dependent Clp protease proteolytic subunit -
  NG827_RS15185 (NG827_15170) - 3623839..3624657 (+) 819 WP_017907386.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48431.65 Da        Isoelectric Point: 7.4579

>NTDB_id=700461 NG827_RS15165 WP_017914782.1 3618704..3620089(-) (radA) [Xanthomonas sacchari strain LT6-2]
MAKAKTAYVCGECGAEYNKWQGQCTECGAWNSLSEIVLESAATAKAPAAARRSGWAGKAETPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMAGTLPVLYVTGEESLGQVAGRAVRLDLPLDGLNALAETGI
EHILQHASAARPKLIVADSVQTLWTEALTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSAHQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGTVKGMEVIAVERLAQALEAASE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=700461 NG827_RS15165 WP_017914782.1 3618704..3620089(-) (radA) [Xanthomonas sacchari strain LT6-2]
ATGGCGAAAGCGAAAACGGCCTATGTCTGCGGCGAGTGCGGCGCCGAATACAACAAGTGGCAGGGCCAGTGCACCGAATG
CGGTGCCTGGAACTCGCTGAGCGAGATCGTGCTGGAGAGCGCGGCCACGGCCAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGGCCGAGACGCCGAAGATCACCGCGCTCAAGGACGTGGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGACCGGGTGCTCGGCGGCGGCCTGGTCGAGGGCGCGGTGGTGCTGATCGGCGGCGACCCCGGCAT
CGGCAAGTCGACCCTGCTGCTGCAGGCGCTGGCGAAGATGGCCGGCACGCTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTGGGCCAGGTCGCCGGGCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAACGCGCTGGCCGAGACCGGCATC
GAGCACATCCTGCAGCATGCCAGCGCGGCGCGACCCAAGCTGATCGTCGCCGACTCGGTGCAGACCCTGTGGACCGAGGC
GTTGACCGCCGCGCCCGGCTCGGTCAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGCTACGCCAAGGAGACCGGCA
CCGCGGTGTTCCTGGTCGGCCACGTCACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGCTGTACTTCGAGGGCGAGAGCGGCAGCCGCTTCCGCCTGCTGCGCGCGTTCAAGAACCGCTTTGGCGCGGTCAACGA
ACTGGGCGTGTTCGCGATGGGCGAGAAGGGGCTGAAGGAAGTCTCCAATCCGTCGGCGATCTTCCTGTCCGGCGGCAGTG
CGCACCAGCCCGGCAGTTGCGTGATGGTCACCCGCGAAGGCACGCGGCCGCTGATGGTGGAAGTGCAGGCCCTGGTCGAT
GCCTCGCCGCTGTCCAATCCGCGGCGCGTGGCGGTGGGCCTGGAACAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCA
CCGCCATGGCGGCATCGTGGTCGGCGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGACCTGCCGGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGATCGGCCGTTGGCGGAAAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGCGAGATCCGCCCGGTGCCCAATGGCGAGGACCGGCTGCGCGAGGCCGCCACGCACGGCTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGTACGGTCAAGGGCATGGAGGTGATCGCGGTGGAGCGCCTGGCGC
AGGCGCTGGAAGCGGCGAGCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

AAA domain (AAA_25)

(88-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.807

100

0.488
  radA Streptococcus mitis SK321

43.573

99.566

0.434
  radA Streptococcus pneumoniae D39

43.107

99.132

0.427
  radA Streptococcus pneumoniae TIGR4

43.107

99.132

0.427
  radA Streptococcus mitis NCTC 12261

43.107

99.132

0.427
  radA Streptococcus pneumoniae R6

43.107

99.132

0.427
  radA Streptococcus pneumoniae Rx1

43.107

99.132

0.427