Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NG829_RS15085 Genome accession   NZ_CP099532
Coordinates   3530573..3531958 (-) Length   461 a.a.
NCBI ID   WP_017907382.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain LT6-16-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3525573..3536958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG829_RS15075 (NG829_15080) - 3527558..3528859 (+) 1302 WP_267121214.1 histidine-type phosphatase -
  NG829_RS15080 (NG829_15085) - 3528970..3530274 (+) 1305 WP_267121215.1 jacalin-like lectin -
  NG829_RS15085 (NG829_15090) radA 3530573..3531958 (-) 1386 WP_017907382.1 DNA repair protein RadA Machinery gene
  NG829_RS15090 (NG829_15095) - 3532264..3532800 (-) 537 WP_267121216.1 adenylate kinase -
  NG829_RS15095 (NG829_15100) - 3533034..3534902 (-) 1869 WP_267122568.1 tetratricopeptide repeat protein -
  NG829_RS15100 (NG829_15105) - 3535057..3535659 (-) 603 WP_267099055.1 ATP-dependent Clp protease proteolytic subunit -
  NG829_RS15105 (NG829_15110) - 3535715..3536521 (+) 807 WP_267099054.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48445.68 Da        Isoelectric Point: 7.4579

>NTDB_id=700443 NG829_RS15085 WP_017907382.1 3530573..3531958(-) (radA) [Xanthomonas sacchari strain LT6-16-1]
MAKAKTAYVCGECGAEYNKWQGQCTECGAWNTLSEIVLESAATAKAPAAARRSGWAGKAETPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMAGTLPVLYVTGEESLGQVAGRAVRLDLPLDGLNALAETGI
EHILQHASAARPKLIVADSVQTLWTEALTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSAHQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGTVKGMEVIAVERLAQALEAASE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=700443 NG829_RS15085 WP_017907382.1 3530573..3531958(-) (radA) [Xanthomonas sacchari strain LT6-16-1]
ATGGCGAAAGCGAAAACGGCCTATGTCTGCGGCGAGTGCGGCGCCGAGTACAACAAGTGGCAGGGCCAGTGCACCGAATG
TGGCGCCTGGAACACGCTGAGCGAGATCGTGCTGGAGAGCGCGGCCACGGCCAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGGCCGAGACGCCGAAGATCACCGCGCTCAAGGACGTGGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGACCGGGTGCTCGGCGGCGGCCTGGTCGAGGGCGCGGTGGTGCTGATCGGCGGCGACCCCGGCAT
CGGCAAGTCGACCCTGCTGCTGCAGGCGCTGGCGAAGATGGCCGGCACGCTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTGGGCCAGGTCGCCGGGCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAACGCGCTGGCCGAGACCGGCATC
GAGCACATCCTGCAGCACGCCAGCGCGGCGCGGCCCAAGCTGATCGTCGCCGACTCGGTGCAGACCCTGTGGACCGAGGC
GCTGACCGCCGCGCCGGGTTCGGTCAGCCAGGTGCGCGAGAGCGCGGCGCGCCTGGTGCGCTACGCCAAGGAGACCGGCA
CGGCGGTGTTCCTGGTCGGCCACGTCACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGCTGTACTTCGAGGGCGAGAGCGGCAGCCGCTTCCGCCTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGA
ACTGGGCGTGTTCGCGATGGGCGAGAAGGGGCTGAAGGAAGTCTCCAATCCGTCGGCGATCTTCCTGTCCGGCGGCAGTG
CGCACCAGCCAGGCAGTTGCGTGATGGTCACCCGCGAGGGCACGCGGCCGCTGATGGTGGAAGTGCAGGCGCTGGTGGAT
GCCTCGCCGCTGTCCAATCCGCGGCGCGTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCA
CCGCCATGGCGGCATCGTGGTCGGCGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGACCTGCCGGTGCTACTGGCGGTGCTGTCGTCGCTGCGCGATCGGCCGTTGGCGGAAAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGCGAGATCCGCCCGGTGCCCAATGGCGAGGACCGGCTGCGCGAGGCCGCCACGCACGGCTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGTACGGTCAAGGGCATGGAGGTGATCGCGGTGGAGCGCCTGGCGC
AGGCGCTGGAAGCGGCGAGCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(88-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.024

100

0.49
  radA Streptococcus mitis SK321

43.355

99.566

0.432
  radA Streptococcus pneumoniae Rx1

42.888

99.132

0.425
  radA Streptococcus pneumoniae R6

42.888

99.132

0.425
  radA Streptococcus pneumoniae TIGR4

42.888

99.132

0.425
  radA Streptococcus pneumoniae D39

42.888

99.132

0.425
  radA Streptococcus mitis NCTC 12261

42.888

99.132

0.425