Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NG828_RS15560 Genome accession   NZ_CP099530
Coordinates   3680090..3681475 (-) Length   461 a.a.
NCBI ID   WP_017907382.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain YT9-19-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3675090..3686475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG828_RS15550 (NG828_15515) - 3677075..3678376 (+) 1302 WP_267081802.1 histidine-type phosphatase -
  NG828_RS15555 (NG828_15520) - 3678486..3679790 (+) 1305 WP_267081803.1 jacalin-like lectin -
  NG828_RS15560 (NG828_15525) radA 3680090..3681475 (-) 1386 WP_017907382.1 DNA repair protein RadA Machinery gene
  NG828_RS15565 (NG828_15530) - 3681783..3682319 (-) 537 WP_026143275.1 adenylate kinase -
  NG828_RS15570 (NG828_15535) - 3682545..3684413 (-) 1869 WP_267083574.1 tetratricopeptide repeat protein -
  NG828_RS15575 (NG828_15540) - 3684569..3685171 (-) 603 WP_017912431.1 ATP-dependent Clp protease proteolytic subunit -
  NG828_RS15580 (NG828_15545) - 3685227..3686051 (+) 825 WP_152238347.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48445.68 Da        Isoelectric Point: 7.4579

>NTDB_id=700426 NG828_RS15560 WP_017907382.1 3680090..3681475(-) (radA) [Xanthomonas sacchari strain YT9-19-2]
MAKAKTAYVCGECGAEYNKWQGQCTECGAWNTLSEIVLESAATAKAPAAARRSGWAGKAETPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMAGTLPVLYVTGEESLGQVAGRAVRLDLPLDGLNALAETGI
EHILQHASAARPKLIVADSVQTLWTEALTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSAHQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGTVKGMEVIAVERLAQALEAASE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=700426 NG828_RS15560 WP_017907382.1 3680090..3681475(-) (radA) [Xanthomonas sacchari strain YT9-19-2]
ATGGCGAAAGCGAAAACGGCCTATGTCTGCGGCGAGTGCGGCGCCGAGTACAACAAGTGGCAGGGCCAGTGCACCGAATG
CGGCGCCTGGAACACGCTGAGCGAGATCGTGCTGGAGAGCGCGGCCACGGCCAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGGCCGAGACGCCGAAGATCACCGCGCTCAAGGACGTGGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGACCGGGTGCTCGGCGGCGGCCTGGTCGAGGGCGCGGTGGTGCTGATCGGCGGCGACCCCGGCAT
CGGCAAGTCGACCCTGCTGCTGCAGGCGCTGGCGAAGATGGCCGGCACGCTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTGGGCCAGGTCGCCGGGCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAACGCGCTGGCCGAGACCGGCATC
GAGCACATCCTGCAGCACGCCAGCGCGGCGCGGCCCAAGCTGATCGTCGCCGACTCGGTGCAGACGCTGTGGACCGAGGC
GCTGACCGCCGCGCCGGGGTCGGTCAGCCAGGTGCGCGAGAGCGCCGCGCGGCTGGTGCGCTACGCCAAGGAGACCGGCA
CCGCGGTGTTCCTGGTCGGCCACGTCACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGCTGTACTTCGAGGGCGAGAGCGGCAGCCGCTTCCGCCTGCTGCGTGCGTTCAAGAACCGCTTCGGCGCGGTCAACGA
ACTGGGCGTGTTCGCGATGGGCGAGAAGGGGCTGAAGGAAGTCTCCAATCCGTCGGCGATCTTCCTGTCCGGCGGCAGCG
CGCACCAGCCCGGCAGCTGCGTGATGGTCACCCGCGAGGGCACGCGGCCGCTGATGGTGGAAGTGCAGGCCCTGGTCGAT
GCCTCGCCGCTGTCCAATCCGCGGCGCGTGGCGGTGGGCCTGGAACAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCA
CCGCCATGGCGGCATCGTGGTCGGCGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGACCTGCCGGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGATCGGCCGTTGGCGGAAAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGCGAGATCCGCCCGGTGCCCAATGGCGAGGACCGGCTGCGCGAGGCCGCCACGCACGGCTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGTACGGTCAAGGGCATGGAGGTGATCGCGGTGGAGCGCCTGGCGC
AGGCGCTGGAAGCGGCGAGCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(88-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.024

100

0.49
  radA Streptococcus mitis SK321

43.355

99.566

0.432
  radA Streptococcus pneumoniae Rx1

42.888

99.132

0.425
  radA Streptococcus pneumoniae R6

42.888

99.132

0.425
  radA Streptococcus pneumoniae TIGR4

42.888

99.132

0.425
  radA Streptococcus pneumoniae D39

42.888

99.132

0.425
  radA Streptococcus mitis NCTC 12261

42.888

99.132

0.425