Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NG893_RS16555 Genome accession   NZ_CP099519
Coordinates   3326954..3327550 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain AZJ065     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3321954..3332550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG893_RS16540 (NG893_16525) helD 3322162..3324216 (-) 2055 WP_004176653.1 DNA helicase IV -
  NG893_RS16545 (NG893_16530) - 3324341..3324787 (+) 447 WP_021312905.1 YccF domain-containing protein -
  NG893_RS16550 (NG893_16535) yccS 3324805..3326940 (+) 2136 WP_002898422.1 YccS family putative transporter -
  NG893_RS16555 (NG893_16540) sxy/tfoX 3326954..3327550 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  NG893_RS16560 (NG893_16545) sulA 3327899..3328408 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  NG893_RS16565 (NG893_16550) ompA 3328761..3329831 (+) 1071 WP_002898408.1 porin OmpA -
  NG893_RS16570 (NG893_16555) matP 3329963..3330415 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  NG893_RS16575 (NG893_16560) - 3330601..3332358 (+) 1758 WP_023286206.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=700378 NG893_RS16555 WP_004179217.1 3326954..3327550(-) (sxy/tfoX) [Klebsiella pneumoniae strain AZJ065]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=700378 NG893_RS16555 WP_004179217.1 3326954..3327550(-) (sxy/tfoX) [Klebsiella pneumoniae strain AZJ065]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51