Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LpgJCM5343_RS08525 Genome accession   NZ_AP018549
Coordinates   1740589..1742400 (+) Length   603 a.a.
NCBI ID   WP_101891052.1    Uniprot ID   -
Organism   Lactobacillus paragasseri strain JCM 5343     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1735589..1747400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LpgJCM5343_RS08500 (LpgJCM5343_16430) - 1735949..1736731 (-) 783 WP_039157653.1 threonine/serine exporter family protein -
  LpgJCM5343_RS08505 (LpgJCM5343_16440) - 1736754..1738301 (-) 1548 WP_048686201.1 ABC-F family ATP-binding cassette domain-containing protein -
  LpgJCM5343_RS08510 (LpgJCM5343_16450) - 1738310..1738702 (-) 393 WP_101891050.1 hypothetical protein -
  LpgJCM5343_RS08515 (LpgJCM5343_16460) - 1738926..1739195 (+) 270 WP_020807069.1 hypothetical protein -
  LpgJCM5343_RS08520 (LpgJCM5343_16470) - 1739301..1740425 (-) 1125 WP_101891051.1 LCP family protein -
  LpgJCM5343_RS08525 (LpgJCM5343_16480) pepF 1740589..1742400 (+) 1812 WP_101891052.1 oligoendopeptidase F Regulator
  LpgJCM5343_RS08530 (LpgJCM5343_16490) - 1742459..1743319 (-) 861 WP_257966054.1 Rpn family recombination-promoting nuclease/putative transposase -
  LpgJCM5343_RS08535 (LpgJCM5343_16510) - 1743472..1744983 (-) 1512 WP_167435366.1 L-lactate permease -
  LpgJCM5343_RS08540 (LpgJCM5343_16520) - 1745103..1745894 (-) 792 WP_003649965.1 metal ABC transporter permease -
  LpgJCM5343_RS08545 (LpgJCM5343_16530) - 1745894..1746553 (-) 660 WP_003649964.1 metal ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68981.87 Da        Isoelectric Point: 4.6542

>NTDB_id=70032 LpgJCM5343_RS08525 WP_101891052.1 1740589..1742400(+) (pepF) [Lactobacillus paragasseri strain JCM 5343]
MALPTRNEVSDDLKWDLSRVFKNDQEWEQEYKQVAQEIKNLSKFKGTLAKSGKDLYEGITAILAVNRRLEKVYVYATMSS
DVDTSNNHYLGFVAKAQSLANQMSAAIAFVDPEILSIPEETLAKFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNARVHKYNSAREAALSENSVPTAVYDTLIKEVNSHLDLLHRYVALRKKILGLKDLQMYDMYVPLTGKPVLSYNFEEA
KAEARKALAPLGEDYLKHVDYIFNNRVIDVVENQNKVTGAYSGGAYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHETDANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAMEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTEQERDAYINFLKSGSSDY
PTEIMKRAGVDMTRADYLRDAFDTFEKRLNEFEKIVDELNAEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=70032 LpgJCM5343_RS08525 WP_101891052.1 1740589..1742400(+) (pepF) [Lactobacillus paragasseri strain JCM 5343]
ATGGCTCTTCCAACAAGAAATGAAGTATCCGATGATCTTAAGTGGGACTTAAGTCGTGTTTTTAAGAACGATCAAGAATG
GGAACAAGAATATAAGCAGGTTGCACAAGAAATCAAGAACTTAAGTAAATTTAAGGGAACACTTGCCAAATCTGGTAAAG
ATCTTTACGAAGGAATTACAGCAATTTTAGCTGTAAATCGACGCTTAGAAAAAGTATATGTTTACGCTACAATGTCAAGC
GATGTAGACACAAGCAATAATCATTACCTCGGTTTTGTTGCTAAAGCACAAAGCTTAGCTAATCAAATGAGTGCTGCAAT
TGCTTTTGTCGATCCTGAAATATTATCTATTCCAGAAGAAACCCTTGCTAAGTTTATGCAAGATGAACCACGTTTAGAAA
ATTATCGACACCGCCTTGAACAGATTACGCAAAAACGTCCTCATACCTTGCCAGCAAATGAAGAAAAAATCATTGCTGAC
GCTGGAGATGCAATGGGTACATCTGCTAATACCTTCAACGTCTTAACTAATTCTGATATGGAATATGGCTACGTCCAAGA
TGAAGACGGTGAAATGGTTCAATTATCTGACGGGCTATATTCACTTTTAATCCAATCTCAAGACCGCAACGTCCGTAAAA
ACGCCTTTGACGTGATGTACGCAAGCTACGGACAGTTTGAAAACAGTCTTGCTTCAACTTTATCAGGTGAGGTAAAAGCT
CACAATTTTAATGCTCGCGTACATAAATACAATTCGGCTAGAGAAGCTGCTTTAAGTGAAAATAGTGTACCAACAGCTGT
TTACGATACATTGATCAAGGAAGTAAATAGCCACCTTGACTTACTTCACCGTTACGTTGCATTAAGAAAGAAAATTCTAG
GCTTAAAAGACCTTCAAATGTACGATATGTACGTACCATTAACCGGGAAGCCAGTTCTTTCTTATAACTTTGAGGAAGCA
AAAGCAGAAGCAAGAAAGGCCTTAGCTCCACTAGGCGAAGACTATTTAAAACATGTTGATTATATTTTTAATAACCGCGT
AATTGATGTGGTTGAAAATCAAAACAAGGTTACTGGTGCATATTCAGGTGGTGCTTACGATACTGATCCATATGAACTAC
TTAACTGGGAAGATAACCTTGATTCACTCTACACTCTAGTCCATGAAACTGGTCACTCTGTCCACTCTTGGTACACAAGA
AACACTCAACCTTATGTCTATGGTGATTATCCAATTTTCGTTGCTGAAATTGCTTCAACTACTAATGAGAATATTTTAAC
CGAGTATTTCTTAGATAAAATTACTGATCCAAAGACCCGTGCATTTGTCTTAAACCATTATCTGGATTCGTTTAAAGGCA
CACTCTTCCGTCAAACTCAATTTGCGGAATTTGAACAATTTATTCATGAAACTGATGCTAATGGTCAGCCGCTAACAGCT
GACGTACTCGATGAATTTTATGGCAACTTAAACCAAAGATACTATGGAGATAGCGTAGAACCTGGTGGAGAAATTGCTAT
GGAATGGTCACGTATTCCTCACTTCTACTACAACTTCTATGTTTACCAATACGCAACAGGTTTTGCAGCTGCAACTGCAC
TTGCTAATAAAGTTGTCCACGGTACTGAGCAAGAACGTGATGCTTATATTAATTTCTTAAAATCAGGCTCTTCAGATTAC
CCAACGGAAATTATGAAACGAGCTGGCGTTGATATGACTAGGGCTGATTACTTGAGGGATGCTTTTGATACTTTTGAAAA
ACGTCTTAATGAATTTGAAAAAATCGTTGATGAATTAAACGCTGAAAAGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.771

98.342

0.509

Multiple sequence alignment