Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PCP11_RS06370 Genome accession   NZ_CP115265
Coordinates   1377669..1378025 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain F022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1372669..1383025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP11_RS06345 (PCP11_06345) fabF 1372881..1374125 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  PCP11_RS06350 (PCP11_06350) pabC 1374125..1374940 (+) 816 WP_003113994.1 aminodeoxychorismate lyase -
  PCP11_RS06355 (PCP11_06355) mltG 1374946..1375995 (+) 1050 WP_003130717.1 endolytic transglycosylase MltG -
  PCP11_RS06360 (PCP11_06360) tmk 1376024..1376656 (+) 633 WP_003122486.1 dTMP kinase -
  PCP11_RS06365 (PCP11_06365) - 1376649..1377635 (+) 987 WP_023875119.1 DNA polymerase III subunit delta' -
  PCP11_RS06370 (PCP11_06370) pilZ 1377669..1378025 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  PCP11_RS06375 (PCP11_06375) - 1378040..1378816 (+) 777 WP_023875120.1 TatD family hydrolase -
  PCP11_RS06380 (PCP11_06380) - 1379042..1380175 (-) 1134 WP_023875121.1 aminotransferase class V-fold PLP-dependent enzyme -
  PCP11_RS06385 (PCP11_06385) - 1380261..1380899 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  PCP11_RS06390 (PCP11_06390) - 1381049..1381945 (+) 897 WP_024947848.1 radical SAM protein -
  PCP11_RS06395 (PCP11_06395) - 1382010..1382642 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=700319 PCP11_RS06370 WP_003091119.1 1377669..1378025(+) (pilZ) [Pseudomonas aeruginosa strain F022]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=700319 PCP11_RS06370 WP_003091119.1 1377669..1378025(+) (pilZ) [Pseudomonas aeruginosa strain F022]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTTTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCTCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449