Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ01_RS09895 Genome accession   NZ_CP099511
Coordinates   2035497..2036123 (-) Length   208 a.a.
NCBI ID   WP_059178413.1    Uniprot ID   -
Organism   Lelliottia amnigena strain P13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2030497..2041123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ01_RS09880 (NFJ01_09880) helD 2030734..2032788 (-) 2055 WP_059178410.1 DNA helicase IV -
  NFJ01_RS09885 (NFJ01_09885) - 2032912..2033358 (+) 447 WP_059178411.1 YccF domain-containing protein -
  NFJ01_RS09890 (NFJ01_09890) yccS 2033378..2035540 (+) 2163 WP_059178412.1 YccS family putative transporter -
  NFJ01_RS09895 (NFJ01_09895) sxy/tfoX 2035497..2036123 (-) 627 WP_059178413.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ01_RS09900 (NFJ01_09900) sulA 2036341..2036850 (+) 510 WP_059178414.1 SOS-induced cell division inhibitor SulA -
  NFJ01_RS09905 (NFJ01_09905) ompA 2037207..2038262 (+) 1056 WP_106379801.1 porin OmpA -
  NFJ01_RS09910 (NFJ01_09910) matP 2038327..2038779 (-) 453 WP_059178416.1 macrodomain Ter protein MatP -
  NFJ01_RS09915 (NFJ01_09915) - 2038966..2040726 (+) 1761 WP_252688317.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23976.58 Da        Isoelectric Point: 9.4138

>NTDB_id=700313 NFJ01_RS09895 WP_059178413.1 2035497..2036123(-) (sxy/tfoX) [Lelliottia amnigena strain P13]
MKKISYERIYKSQEYLSSLGDIHHRALFGGYTLAVNEAVFAMVSEGELYLRACEESAQYCVKHNPTYLELVKRGRPVLLN
YYRVDDGLWQDREKLLQLSSFALKAARQERVERDNRRRLKDLPNLTFPIEVLLYEAGITSEIMLRTLGAEESWLKIRAKN
KHLGIKVLFALAGAIEGLHEAALPTARRRELNEWFNALPVRSDNHSGK

Nucleotide


Download         Length: 627 bp        

>NTDB_id=700313 NFJ01_RS09895 WP_059178413.1 2035497..2036123(-) (sxy/tfoX) [Lelliottia amnigena strain P13]
ATGAAAAAGATATCATACGAACGGATCTATAAATCCCAGGAATACCTCTCATCTTTGGGTGATATCCATCATAGGGCACT
TTTTGGTGGCTATACGTTGGCGGTAAATGAGGCTGTGTTTGCCATGGTGTCTGAGGGCGAACTGTATCTGCGAGCGTGTG
AAGAGAGTGCGCAGTACTGTGTAAAACATAATCCGACCTATCTGGAATTGGTAAAACGTGGCAGGCCTGTTCTGTTGAAT
TATTACCGTGTGGACGACGGACTTTGGCAAGATCGGGAAAAGCTCCTGCAACTTTCCAGCTTTGCATTAAAAGCAGCACG
ACAGGAACGTGTCGAGCGGGATAATCGGCGCAGGCTAAAAGATTTGCCCAACCTGACTTTTCCGATTGAAGTTCTCCTCT
ACGAAGCGGGTATTACCAGTGAAATTATGCTCCGTACACTTGGTGCCGAAGAGAGTTGGCTGAAGATCAGAGCCAAAAAT
AAACACCTTGGCATTAAGGTCCTGTTTGCACTTGCGGGGGCAATTGAAGGGTTACATGAGGCGGCGCTCCCGACAGCGAG
GCGTCGGGAGCTTAATGAGTGGTTTAATGCGCTTCCTGTAAGGTCTGATAATCATTCCGGGAAGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

56.65

97.596

0.553