Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP74_RS23845 Genome accession   NZ_CP115263
Coordinates   5174460..5174789 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain F023     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5169460..5179789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP74_RS23830 (PCP74_23840) uvrB 5170847..5172859 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  PCP74_RS23835 (PCP74_23845) - 5173047..5174243 (+) 1197 WP_019682264.1 amino acid aminotransferase -
  PCP74_RS23845 (PCP74_23855) comEA/comE1 5174460..5174789 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  PCP74_RS23850 (PCP74_23860) - 5174980..5176977 (-) 1998 WP_003122257.1 polysaccharide biosynthesis protein -
  PCP74_RS23855 (PCP74_23865) - 5177175..5178212 (-) 1038 WP_003452706.1 MraY family glycosyltransferase -
  PCP74_RS23860 (PCP74_23870) - 5178212..5179174 (-) 963 WP_034004379.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=700292 PCP74_RS23845 WP_003104586.1 5174460..5174789(-) (comEA/comE1) [Pseudomonas aeruginosa strain F023]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=700292 PCP74_RS23845 WP_003104586.1 5174460..5174789(-) (comEA/comE1) [Pseudomonas aeruginosa strain F023]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385