Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LPT20_RS05650 Genome accession   NZ_CP099504
Coordinates   1170574..1171077 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain S36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1171858..1172622 1170574..1171077 flank 781


Gene organization within MGE regions


Location: 1170574..1172622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT20_RS05650 (LPT20_05650) ssbA 1170574..1171077 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  LPT20_RS05655 (LPT20_05655) rpsF 1171098..1171394 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  LPT20_RS05660 (LPT20_05660) - 1171638..1171802 (+) 165 WP_001052486.1 hypothetical protein -
  LPT20_RS05665 (LPT20_05665) istB 1171858..1172619 (-) 762 WP_001066124.1 IS21-like element helper ATPase IstB -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=700189 LPT20_RS05650 WP_000934799.1 1170574..1171077(-) (ssbA) [Staphylococcus aureus strain S36]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=700189 LPT20_RS05650 WP_000934799.1 1170574..1171077(-) (ssbA) [Staphylococcus aureus strain S36]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAACAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365