Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PCP09_RS24930 Genome accession   NZ_CP115261
Coordinates   5378607..5379203 (-) Length   198 a.a.
NCBI ID   WP_070142800.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F025     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5373607..5384203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP09_RS24905 (PCP09_24890) - 5373953..5374150 (-) 198 Protein_4922 TetR family transcriptional regulator -
  PCP09_RS24910 (PCP09_24895) - 5374243..5375826 (+) 1584 WP_003121915.1 flavin-containing monooxygenase -
  PCP09_RS24915 (PCP09_24900) - 5375823..5376710 (+) 888 WP_003103932.1 SDR family NAD(P)-dependent oxidoreductase -
  PCP09_RS24920 (PCP09_24905) - 5376784..5377323 (+) 540 WP_003103931.1 CbrC family protein -
  PCP09_RS24925 (PCP09_24910) - 5377336..5378484 (-) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  PCP09_RS24930 (PCP09_24915) recR 5378607..5379203 (-) 597 WP_070142800.1 recombination mediator RecR Machinery gene
  PCP09_RS24935 (PCP09_24920) - 5379282..5379608 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  PCP09_RS24940 (PCP09_24925) dnaX 5379654..5381771 (-) 2118 WP_329006442.1 DNA polymerase III subunit gamma/tau -
  PCP09_RS24945 (PCP09_24930) - 5381808..5382674 (+) 867 WP_114230700.1 substrate-binding periplasmic protein -
  PCP09_RS24955 (PCP09_24940) - 5382928..5383305 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21201.48 Da        Isoelectric Point: 6.0063

>NTDB_id=700077 PCP09_RS24930 WP_070142800.1 5378607..5379203(-) (recR) [Pseudomonas aeruginosa strain F025]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEVIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=700077 PCP09_RS24930 WP_070142800.1 5378607..5379203(-) (recR) [Pseudomonas aeruginosa strain F025]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGTGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGTGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(81-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48