Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PCP09_RS18415 Genome accession   NZ_CP115261
Coordinates   3879118..3879624 (-) Length   168 a.a.
NCBI ID   WP_058131188.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F025     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3874118..3884624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP09_RS18385 (PCP09_18380) - 3874806..3875144 (-) 339 WP_003121436.1 hypothetical protein -
  PCP09_RS18390 (PCP09_18385) - 3875219..3875422 (+) 204 WP_079266034.1 hypothetical protein -
  PCP09_RS18395 (PCP09_18390) - 3875432..3875863 (-) 432 WP_124148953.1 hypothetical protein -
  PCP09_RS18400 (PCP09_18395) - 3876115..3876270 (+) 156 WP_153549573.1 hypothetical protein -
  PCP09_RS18405 (PCP09_18400) - 3876488..3878034 (+) 1547 WP_228778284.1 IS3 family transposase -
  PCP09_RS18410 (PCP09_18405) - 3878270..3879082 (+) 813 WP_058131189.1 NYN domain-containing protein -
  PCP09_RS18415 (PCP09_18410) radC 3879118..3879624 (-) 507 WP_058131188.1 RadC family protein Machinery gene
  PCP09_RS18420 (PCP09_18415) - 3879972..3881654 (+) 1683 WP_329006423.1 DUF4041 domain-containing protein -
  PCP09_RS18425 (PCP09_18420) - 3881680..3882036 (+) 357 WP_058131187.1 hypothetical protein -
  PCP09_RS18430 (PCP09_18425) - 3882167..3882463 (-) 297 WP_058131186.1 LasR-specific antiactivator QslA -
  PCP09_RS18435 (PCP09_18430) - 3882460..3882729 (-) 270 WP_058131185.1 hypothetical protein -
  PCP09_RS18440 (PCP09_18435) - 3883351..3883695 (+) 345 WP_071572250.1 OB-fold protein -
  PCP09_RS18445 (PCP09_18440) mads1 3883813..3884028 (+) 216 WP_058131184.1 methylation-associated defense system helix-turn-helix domain-containing protein MAD1 -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18584.42 Da        Isoelectric Point: 6.6491

>NTDB_id=700064 PCP09_RS18415 WP_058131188.1 3879118..3879624(-) (radC) [Pseudomonas aeruginosa strain F025]
MPQLSLAFDASLMIRDEQGRYLPATAEQILDAARKVIDQKIQRGAAFTSSELVKEYLIAKLGGFEHEVFAALFLDAKHRL
IQYVEMFRGTIDSASVYPREVVKEALRLNAAAVIFAHNHPSGNPEPSQADKVLTQRLKEALALVDVRSLDHVIVAGQRTV
SFAELGLL

Nucleotide


Download         Length: 507 bp        

>NTDB_id=700064 PCP09_RS18415 WP_058131188.1 3879118..3879624(-) (radC) [Pseudomonas aeruginosa strain F025]
ATGCCGCAGCTTTCTCTCGCCTTTGACGCTTCCCTGATGATTCGCGACGAGCAAGGTCGCTATCTGCCTGCCACTGCAGA
ACAGATCCTGGATGCTGCTCGCAAGGTGATCGATCAAAAAATTCAGCGAGGCGCAGCCTTCACATCTTCGGAGCTGGTCA
AGGAGTACCTGATCGCGAAGCTGGGTGGCTTTGAGCACGAGGTTTTCGCAGCGCTGTTTCTGGATGCCAAGCATCGCCTC
ATCCAGTACGTCGAGATGTTCCGCGGCACCATCGACAGTGCATCTGTTTACCCGCGCGAGGTGGTCAAGGAAGCGCTGCG
CCTCAATGCTGCGGCAGTGATCTTCGCGCACAACCATCCAAGCGGAAATCCAGAGCCAAGCCAGGCTGACAAGGTGCTAA
CACAACGCTTGAAGGAGGCCCTGGCGCTGGTCGATGTCCGCTCGCTGGATCACGTCATTGTGGCAGGCCAACGCACCGTA
TCTTTCGCTGAGCTTGGGTTGTTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(47-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

44.366

84.524

0.375