Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LPT21_RS05885 Genome accession   NZ_CP099497
Coordinates   1227143..1227589 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0213-M-4A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1222143..1232589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT21_RS05855 (LPT21_05855) gcvPA 1223069..1224415 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LPT21_RS05860 (LPT21_05860) gcvT 1224435..1225526 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  LPT21_RS05865 (LPT21_05865) - 1225685..1226209 (-) 525 WP_001015120.1 shikimate kinase -
  LPT21_RS05870 (LPT21_05870) - 1226199..1226345 (-) 147 WP_001789879.1 hypothetical protein -
  LPT21_RS05875 (LPT21_05875) comGF 1226442..1226939 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  LPT21_RS05880 (LPT21_05880) comGE 1226857..1227156 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  LPT21_RS05885 (LPT21_05885) comGD 1227143..1227589 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  LPT21_RS05890 (LPT21_05890) comGC 1227567..1227878 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  LPT21_RS05895 (LPT21_05895) comGB 1227892..1228962 (-) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  LPT21_RS05900 (LPT21_05900) comGA 1228934..1229908 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  LPT21_RS05905 (LPT21_05905) - 1229960..1230583 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  LPT21_RS05910 (LPT21_05910) - 1230580..1230909 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  LPT21_RS05915 (LPT21_05915) - 1230909..1231895 (-) 987 WP_000161315.1 ROK family glucokinase -
  LPT21_RS05920 (LPT21_05920) - 1231892..1232095 (-) 204 WP_000087559.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=700064 LPT21_RS05885 WP_001796473.1 1227143..1227589(-) (comGD) [Staphylococcus aureus strain 0213-M-4A]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=700064 LPT21_RS05885 WP_001796473.1 1227143..1227589(-) (comGD) [Staphylococcus aureus strain 0213-M-4A]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993