NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	LPT16_RS07820	Genome accession	NZ_CP099495
Coordinates	1576589..1577092 (-)	Length	167 a.a.
NCBI ID	WP_000934799.1	Uniprot ID	A0A7U7IE99
Organism	Staphylococcus aureus strain JL28
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1571589..1582092

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPT16_RS07775 (LPT16_07775)	-	1571728..1572309 (-)	582	WP_000158385.1	histidine phosphatase family protein	-
LPT16_RS07780 (LPT16_07780)	-	1572487..1572695 (+)	209	Protein_1494	hypothetical protein	-
LPT16_RS07785 (LPT16_07785)	-	1572737..1572988 (-)	252	WP_000466741.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
LPT16_RS07790 (LPT16_07790)	-	1573282..1573545 (+)	264	WP_001055897.1	helix-turn-helix transcriptional regulator	-
LPT16_RS07795 (LPT16_07795)	-	1573683..1574255 (-)	573	WP_000769718.1	PepSY domain-containing protein	-
LPT16_RS07800 (LPT16_07800)	-	1574435..1574803 (-)	369	WP_000849160.1	YxeA family protein	-
LPT16_RS07805 (LPT16_07805)	-	1575169..1575483 (-)	315	Protein_1499	toxin	-
LPT16_RS07810 (LPT16_07810)	-	1575618..1575838 (+)	221	Protein_1500	site-specific integrase	-
LPT16_RS07815 (LPT16_07815)	rpsR	1576295..1576537 (-)	243	WP_000897044.1	30S ribosomal protein S18	-
LPT16_RS07820 (LPT16_07820)	ssbA	1576589..1577092 (-)	504	WP_000934799.1	single-stranded DNA-binding protein	Machinery gene
LPT16_RS07825 (LPT16_07825)	rpsF	1577113..1577409 (-)	297	WP_001261460.1	30S ribosomal protein S6	-
LPT16_RS07830 (LPT16_07830)	-	1577653..1577844 (+)	192	WP_001052481.1	hypothetical protein	-
LPT16_RS07835 (LPT16_07835)	ychF	1577930..1579027 (-)	1098	WP_001218732.1	redox-regulated ATPase YchF	-
LPT16_RS07840 (LPT16_07840)	-	1579039..1579242 (-)	204	WP_000157348.1	DUF951 domain-containing protein	-
LPT16_RS07845 (LPT16_07845)	-	1579272..1580153 (-)	882	WP_000373073.1	mechanosensitive ion channel family protein	-
LPT16_RS07850 (LPT16_07850)	-	1580307..1581152 (-)	846	WP_001825659.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305

                                >NTDB_id=700035 LPT16_RS07820 WP_000934799.1 1576589..1577092(-) (ssbA) [Staphylococcus aureus strain JL28]

MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR

NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI

SDDDLPF

Nucleotide

Download Length: 504 bp

                                >NTDB_id=700035 LPT16_RS07820 WP_000934799.1 1576589..1577092(-) (ssbA) [Staphylococcus aureus strain JL28]

ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC

GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT

TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT

AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA

TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC

AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA

AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	65.341	100	0.689
ssb	Latilactobacillus sakei subsp. sakei 23K	54.971	100	0.563
ssbB	Bacillus subtilis subsp. subtilis str. 168	58.491	63.473	0.371
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.365

Detailed information NTG0700035