Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PCP09_RS06150 Genome accession   NZ_CP115261
Coordinates   1324399..1325424 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain F025     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1319399..1330424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP09_RS06125 (PCP09_06120) - 1319587..1319904 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  PCP09_RS06130 (PCP09_06125) trkA 1320053..1321426 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  PCP09_RS06135 (PCP09_06130) rsmB 1321454..1322758 (-) 1305 WP_003118477.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PCP09_RS06140 (PCP09_06135) fmt 1322755..1323699 (-) 945 WP_003107057.1 methionyl-tRNA formyltransferase -
  PCP09_RS06145 (PCP09_06140) def 1323754..1324260 (-) 507 WP_003107059.1 peptide deformylase -
  PCP09_RS06150 (PCP09_06145) tsaP 1324399..1325424 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PCP09_RS06155 (PCP09_06150) dprA 1325559..1326647 (+) 1089 WP_023108719.1 DNA-processing protein DprA Machinery gene
  PCP09_RS06160 (PCP09_06155) - 1326688..1327245 (+) 558 WP_016561457.1 L-threonylcarbamoyladenylate synthase -
  PCP09_RS06165 (PCP09_06160) - 1327255..1328232 (-) 978 WP_058159881.1 NADPH:quinone reductase -
  PCP09_RS06170 (PCP09_06165) hemF 1328423..1329340 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PCP09_RS06175 (PCP09_06170) aroE 1329398..1330222 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=700028 PCP09_RS06150 WP_003097294.1 1324399..1325424(+) (tsaP) [Pseudomonas aeruginosa strain F025]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=700028 PCP09_RS06150 WP_003097294.1 1324399..1325424(+) (tsaP) [Pseudomonas aeruginosa strain F025]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393