Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NC516_RS09385 Genome accession   NZ_CP099485
Coordinates   1844856..1845545 (+) Length   229 a.a.
NCBI ID   WP_076645336.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0095     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1839856..1850545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS09365 (NC516_09365) - 1840298..1840849 (+) 552 WP_061827366.1 isochorismatase family cysteine hydrolase -
  NC516_RS09370 (NC516_09370) fusA 1841419..1843506 (-) 2088 WP_016265721.1 elongation factor G -
  NC516_RS09375 (NC516_09375) rpsG 1843602..1844072 (-) 471 WP_004270185.1 30S ribosomal protein S7 -
  NC516_RS09380 (NC516_09380) rpsL 1844162..1844575 (-) 414 WP_004270179.1 30S ribosomal protein S12 -
  NC516_RS09385 (NC516_09385) comC 1844856..1845545 (+) 690 WP_076645336.1 A24 family peptidase Machinery gene
  NC516_RS09390 (NC516_09390) - 1845549..1846121 (-) 573 WP_016265723.1 isochorismatase family protein -
  NC516_RS09395 (NC516_09395) rpoC 1846295..1849939 (-) 3645 WP_035147345.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26190.50 Da        Isoelectric Point: 7.2085

>NTDB_id=699987 NC516_RS09385 WP_076645336.1 1844856..1845545(+) (comC) [Latilactobacillus sakei strain WiKim0095]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGATIFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLEPVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ

Nucleotide


Download         Length: 690 bp        

>NTDB_id=699987 NC516_RS09385 WP_076645336.1 1844856..1845545(+) (comC) [Latilactobacillus sakei strain WiKim0095]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCACCATCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTGGGCCTTGAACCCGTTTTGCGAATTCTCTTGGCGGCCTG
TCTAATTTGCATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTAATTCTACTTCTACAAACACCGCAGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-89)

Type IV leader peptidase family (Peptidase_A24)

(99-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

97.38

100

0.974