Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   M5C72_RS11160 Genome accession   NZ_CP099481
Coordinates   2195978..2197741 (-) Length   587 a.a.
NCBI ID   WP_076613816.1    Uniprot ID   A0A1P8Q0B5
Organism   Companilactobacillus allii strain WiKim39     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2190978..2202741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C72_RS11145 (M5C72_11145) - 2191848..2192579 (-) 732 WP_076613812.1 GntR family transcriptional regulator -
  M5C72_RS11150 (M5C72_11150) - 2192771..2193844 (+) 1074 WP_076613813.1 SGNH/GDSL hydrolase family protein -
  M5C72_RS11155 (M5C72_11155) rcrQ 2194224..2195978 (-) 1755 WP_076613815.1 ABC transporter ATP-binding protein Regulator
  M5C72_RS11160 (M5C72_11160) rcrP 2195978..2197741 (-) 1764 WP_076613816.1 ABC transporter ATP-binding protein Regulator
  M5C72_RS11165 (M5C72_11165) - 2197800..2198243 (-) 444 WP_076613817.1 MarR family transcriptional regulator -
  M5C72_RS11170 (M5C72_11170) - 2198433..2199287 (-) 855 WP_076613818.1 DegV family protein -
  M5C72_RS11175 (M5C72_11175) - 2199284..2199829 (-) 546 WP_076613819.1 DUF1836 domain-containing protein -
  M5C72_RS12950 - 2200167..2200250 (+) 84 WP_353846882.1 putative holin-like toxin -
  M5C72_RS11180 (M5C72_11180) - 2200652..2200735 (+) 84 WP_225972236.1 putative holin-like toxin -
  M5C72_RS11185 (M5C72_11185) - 2201154..2202149 (-) 996 WP_076613820.1 DMT family transporter -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64685.36 Da        Isoelectric Point: 4.9289

>NTDB_id=699949 M5C72_RS11160 WP_076613816.1 2195978..2197741(-) (rcrP) [Companilactobacillus allii strain WiKim39]
MFKLLSRMNKKEYGMMVISTAFIVIQVWLELSIPSYMSTITEKIETKGSTIGDIIAPGLMMLLLSVLSVLVAIVTGYFVA
KIAGGFTARVRKDVFNQVMDYSTQDIKNFSVSSLLTRSTNDITQIQQFVAMGLQVIIKAPITAVWAITKIAGKGWQWTTA
TAVAVLILCIMLTFILTKVQPKFKMVQKLTDRLNLVTQENLSGVRVVHAYNAEEYQNDKFNKANDDLTNTNLYANRVLAL
MNPGMSFISSSLTLAVYAIGAIIIQQASGAQRLSLFSDMIVFSSYAIQVILGFLLLSIIFVILPRVTVSAGRINDVLDID
PTIKFNNETTKEPSEKGTIQFENVSFQYPDAEIPAVAKLSFKAQKGQTIALIGSTGSGKSSALNLIPRLYDATDGQVLID
GVNVKDYSEKELNDRIGYIPQKAVLFSGSIKSNIDFGESSNKADDISDSDAYDALEIAQSRDFVEGKEDGLESNVAQHGD
NFSGGQKQRLAIARAIARRPEILLFDDSFSALDYETDKKLRDDLKEKDADTTKVIVAQRISTIIDADQIIVLDKGQVVGQ
GTHEELLKDNEVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=699949 M5C72_RS11160 WP_076613816.1 2195978..2197741(-) (rcrP) [Companilactobacillus allii strain WiKim39]
ATGTTTAAATTACTTAGCAGAATGAACAAAAAAGAATATGGCATGATGGTGATCAGTACAGCCTTCATTGTCATTCAAGT
TTGGTTGGAATTGAGTATTCCAAGTTATATGTCCACAATTACTGAAAAAATTGAAACTAAAGGCTCGACTATTGGAGATA
TTATAGCACCTGGATTGATGATGCTATTGTTATCAGTTCTAAGTGTTCTAGTAGCCATTGTAACTGGCTACTTCGTCGCC
AAGATTGCCGGTGGATTTACGGCTAGAGTGAGAAAAGACGTCTTCAATCAAGTCATGGATTATTCTACACAAGATATTAA
GAACTTTTCAGTCTCAAGTTTACTAACACGTTCAACAAATGATATTACTCAGATCCAACAATTCGTTGCTATGGGTCTTC
AAGTTATTATCAAAGCACCGATCACAGCAGTTTGGGCTATCACTAAAATTGCTGGTAAGGGATGGCAATGGACTACTGCC
ACAGCTGTTGCCGTCTTGATACTTTGTATAATGTTGACATTTATTCTGACCAAAGTTCAACCCAAATTCAAAATGGTCCA
AAAGCTTACTGATAGATTGAATCTGGTTACACAAGAGAACTTATCAGGTGTCAGAGTAGTACATGCATACAATGCAGAAG
AATATCAAAATGACAAGTTTAACAAAGCCAATGATGACTTAACTAATACGAACCTGTATGCAAACCGTGTCTTGGCATTA
ATGAATCCGGGAATGAGCTTCATTTCTAGTTCATTGACGCTAGCTGTATACGCTATTGGTGCCATTATTATTCAACAAGC
AAGTGGAGCCCAAAGATTGTCGCTGTTCAGTGACATGATCGTGTTCTCATCATATGCTATTCAAGTTATCTTAGGATTCT
TATTATTATCGATTATCTTTGTAATTCTTCCTCGTGTAACTGTATCTGCAGGAAGAATCAATGATGTGTTGGATATTGAT
CCTACAATTAAATTCAATAATGAAACAACCAAAGAACCAAGTGAGAAAGGTACTATTCAGTTTGAAAATGTAAGTTTCCA
ATATCCCGATGCTGAGATACCAGCTGTTGCTAAGCTATCATTTAAAGCACAAAAGGGTCAGACTATTGCGCTTATTGGCT
CCACTGGTAGTGGTAAGAGTTCAGCCTTGAACCTTATTCCGCGTCTATATGATGCTACAGATGGTCAAGTATTAATTGAT
GGTGTCAATGTTAAAGATTATTCAGAAAAAGAACTAAATGATCGAATCGGATATATCCCACAAAAGGCTGTCTTATTTAG
TGGCAGCATCAAGAGCAATATTGACTTTGGTGAGAGTTCTAACAAAGCTGATGATATAAGTGATTCAGATGCCTATGATG
CACTAGAGATTGCACAATCACGTGATTTTGTTGAGGGAAAAGAAGATGGTTTAGAGTCTAATGTTGCTCAACATGGTGAT
AATTTCTCAGGTGGTCAGAAGCAAAGATTGGCGATTGCTCGTGCAATTGCTCGTCGACCAGAAATATTGTTGTTTGATGA
CTCATTTTCAGCACTAGATTATGAGACGGATAAAAAGTTACGTGATGACTTAAAAGAAAAAGATGCAGATACTACTAAGG
TTATTGTTGCCCAACGTATCAGTACTATTATCGATGCTGATCAGATTATTGTTCTTGATAAAGGACAAGTTGTCGGTCAA
GGAACTCACGAAGAGTTGCTCAAAGATAATGAAGTATATCAAGAAATCGCTTATTCACAACTATCAAAGGAGGAACTTGC
CTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-290)

ABC transporter (ABC_tran)

(358-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8Q0B5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.184

100

0.562