Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   M5C72_RS11155 Genome accession   NZ_CP099481
Coordinates   2194224..2195978 (-) Length   584 a.a.
NCBI ID   WP_076613815.1    Uniprot ID   A0A1P8Q0F9
Organism   Companilactobacillus allii strain WiKim39     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2189224..2200978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C72_RS11140 (M5C72_11140) - 2189977..2191851 (+) 1875 WP_225972218.1 PTS glucose transporter subunit IIABC -
  M5C72_RS11145 (M5C72_11145) - 2191848..2192579 (-) 732 WP_076613812.1 GntR family transcriptional regulator -
  M5C72_RS11150 (M5C72_11150) - 2192771..2193844 (+) 1074 WP_076613813.1 SGNH/GDSL hydrolase family protein -
  M5C72_RS11155 (M5C72_11155) rcrQ 2194224..2195978 (-) 1755 WP_076613815.1 ABC transporter ATP-binding protein Regulator
  M5C72_RS11160 (M5C72_11160) rcrP 2195978..2197741 (-) 1764 WP_076613816.1 ABC transporter ATP-binding protein Regulator
  M5C72_RS11165 (M5C72_11165) - 2197800..2198243 (-) 444 WP_076613817.1 MarR family transcriptional regulator -
  M5C72_RS11170 (M5C72_11170) - 2198433..2199287 (-) 855 WP_076613818.1 DegV family protein -
  M5C72_RS11175 (M5C72_11175) - 2199284..2199829 (-) 546 WP_076613819.1 DUF1836 domain-containing protein -
  M5C72_RS12950 - 2200167..2200250 (+) 84 WP_353846882.1 putative holin-like toxin -
  M5C72_RS11180 (M5C72_11180) - 2200652..2200735 (+) 84 WP_225972236.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64637.72 Da        Isoelectric Point: 5.3603

>NTDB_id=699948 M5C72_RS11155 WP_076613815.1 2194224..2195978(-) (rcrQ) [Companilactobacillus allii strain WiKim39]
MRRANTRDINIKDGVVEYGRPYIAPVLFAVVFAALGSITSIIGPSQLSKITDLITNGLMGKIDVAQVLKITMIMGIIYVA
GAVMSYGQGFIMATVTQKFTQKLRNNIVHKINKLPLNYFDTHNEGDTLSRVTNDLDTMGQSLNQSLGTLISSITLFIGCV
VMMLITNVVMSITAIVSVLIGFVLTIVIMSRSQKYFNSQQNRLADISSYTEEIYSGHAVVKTSNYADDAKENFDGMNNKL
YDSVWKSQFMSGIMQPLMGFVGNFGYVMVCIVGGVMAIDGKISMGTIVAFMIYVRLFSQPLSQIAQAFASLQSAQAAMKR
VFGFLGEAEEIDDSDKDVEVPKVTGDVEFDHVKFGYLPGQTIIKDFTVHTKPGQKVAIVGPTGSGKTTTVNLLMRFYDMN
SGTIKMDGVDIEDMKRSDVRDQFDMVLQDAWLFDDTVRNNLVYNKKDVSEEQIQKAIKAVGIDHFIDTLPKGLDTVLDDS
ISLSVGQKQLMTIARALIKNSPMLILDEATSSVDTRTEEQIQKAMDLLMKGRTSFVIAHRLSTIKNADIILVVKDGEIIE
RGTHDELMEVNGFYANMYNSQFQE

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=699948 M5C72_RS11155 WP_076613815.1 2194224..2195978(-) (rcrQ) [Companilactobacillus allii strain WiKim39]
ATGCGTAGAGCAAATACCAGAGATATCAATATCAAAGATGGCGTAGTAGAGTATGGTAGACCCTACATTGCACCAGTACT
GTTTGCTGTAGTTTTCGCTGCACTAGGCAGTATTACTTCTATAATTGGACCCAGTCAATTGAGCAAGATCACTGATCTTA
TCACTAATGGATTGATGGGTAAAATAGACGTTGCTCAAGTACTTAAGATAACTATGATCATGGGAATTATTTACGTTGCT
GGGGCAGTGATGTCATATGGTCAAGGATTCATAATGGCCACAGTAACTCAGAAGTTTACACAAAAACTAAGAAATAATAT
TGTTCACAAAATCAATAAATTACCACTGAACTACTTCGATACTCATAACGAAGGTGACACATTGAGTCGAGTTACTAATG
ACTTGGATACAATGGGACAATCATTGAACCAAAGTCTAGGTACATTGATATCATCTATCACTTTGTTTATCGGATGTGTC
GTCATGATGCTTATCACAAATGTTGTTATGAGTATCACAGCGATTGTTTCAGTGTTGATAGGATTTGTACTGACTATTGT
GATTATGAGTAGATCTCAAAAGTACTTCAATAGTCAACAGAACCGTTTGGCCGATATCTCAAGTTACACAGAAGAGATTT
ATTCAGGACACGCAGTCGTTAAGACTTCAAATTATGCCGATGATGCTAAAGAGAACTTTGATGGGATGAATAATAAATTG
TACGATTCAGTTTGGAAATCACAATTTATGTCAGGTATCATGCAACCGTTGATGGGATTTGTTGGTAACTTTGGATATGT
GATGGTCTGTATCGTCGGTGGAGTTATGGCAATTGACGGTAAGATCAGTATGGGTACTATCGTTGCCTTTATGATTTATG
TACGTCTATTCTCACAACCTCTATCACAAATAGCTCAAGCTTTTGCCAGTTTACAATCAGCTCAAGCCGCAATGAAACGT
GTCTTTGGATTCTTGGGAGAAGCAGAAGAAATAGATGATTCTGACAAGGATGTCGAAGTACCAAAAGTAACTGGTGATGT
TGAATTTGACCATGTTAAATTTGGATATTTACCAGGTCAAACAATTATCAAAGATTTTACAGTTCATACTAAACCCGGAC
AAAAAGTTGCTATCGTTGGTCCTACAGGTTCAGGTAAGACAACGACAGTTAATCTTTTGATGAGATTCTATGATATGAAT
AGTGGAACGATTAAAATGGACGGCGTCGATATTGAAGATATGAAACGTTCTGACGTACGTGATCAATTCGATATGGTGCT
TCAAGATGCATGGTTATTTGATGATACAGTAAGAAATAATCTAGTATATAACAAGAAAGATGTTTCCGAAGAACAAATTC
AAAAAGCCATCAAGGCTGTTGGTATTGATCACTTTATCGATACCTTGCCAAAAGGACTCGATACAGTTTTAGATGATTCA
ATCAGTCTATCAGTCGGCCAAAAACAATTGATGACCATTGCTAGAGCATTGATCAAGAATTCACCAATGTTGATTCTTGA
CGAAGCCACAAGTTCAGTTGATACAAGAACCGAAGAACAAATCCAAAAAGCAATGGATCTATTGATGAAAGGTAGGACCT
CATTTGTCATCGCCCATAGACTTTCTACTATTAAGAATGCTGATATTATCTTAGTAGTAAAAGATGGTGAGATTATTGAA
CGAGGTACACATGATGAGTTGATGGAAGTTAATGGATTTTATGCAAATATGTATAATAGCCAGTTCCAGGAGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(27-301)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8Q0F9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.494

97.089

0.587