Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M5C72_RS10050 Genome accession   NZ_CP099481
Coordinates   1972972..1974342 (-) Length   456 a.a.
NCBI ID   WP_076613583.1    Uniprot ID   A0A1P8PZW5
Organism   Companilactobacillus allii strain WiKim39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1967972..1979342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C72_RS10030 (M5C72_10030) - 1968326..1968739 (-) 414 WP_076613573.1 ribonuclease III domain-containing protein -
  M5C72_RS10035 (M5C72_10035) cysS 1968732..1970135 (-) 1404 WP_076613575.1 cysteine--tRNA ligase -
  M5C72_RS10040 (M5C72_10040) gltX 1970215..1971711 (-) 1497 WP_076613577.1 glutamate--tRNA ligase -
  M5C72_RS10045 (M5C72_10045) - 1971692..1972948 (-) 1257 WP_076613580.1 PIN/TRAM domain-containing protein -
  M5C72_RS10050 (M5C72_10050) radA 1972972..1974342 (-) 1371 WP_076613583.1 DNA repair protein RadA Machinery gene
  M5C72_RS10055 (M5C72_10055) - 1974369..1974911 (-) 543 WP_076613586.1 hypothetical protein -
  M5C72_RS10060 (M5C72_10060) - 1975077..1975376 (+) 300 WP_076613588.1 GNAT family N-acetyltransferase -
  M5C72_RS10065 (M5C72_10065) rpiA 1975377..1976066 (+) 690 WP_076613590.1 ribose-5-phosphate isomerase RpiA -
  M5C72_RS10070 (M5C72_10070) - 1976089..1977432 (+) 1344 WP_076613592.1 C1 family peptidase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50007.27 Da        Isoelectric Point: 6.5092

>NTDB_id=699946 M5C72_RS10050 WP_076613583.1 1972972..1974342(-) (radA) [Companilactobacillus allii strain WiKim39]
MAKSKSKFVCQNCGYVSPKYLGRCPNCGSWNQMVEEVEHVETAQATPSRRTSDVTSRPIKINDVSFEKEARVKTDMSELN
RVLGGGIVPGSLILIGGDPGIGKSTLLMQVSGQLQKTGGKVLYVSGEESASQIKMRADRLGVSGDELYVYPQTDMSYIRD
QINNMDPDYLVIDSIQTMDEPEISSAVGSISQVREVTAELMNIAKQQNITVFVVGHVTKGGAIAGPKILEHMVDTVLYFE
GDTHHSYRILRSVKNRFGSTNEIGIFEMQTKGLVEVANPSEIFLEERLKDANGSAVVVSMEGTRPILVEIQSLITPTIFG
NAKRTATGLDHNRVSVIMAVLEKRGNLMLQNQDAYLKSTGGVKLDEPAIDLALVMSIASSYKNIGIPATDCFVGEVGLTG
EVRRVNRIDQRVNEAEKLGFKRIFVPKNNLGDWTKNNKIEIIGVNTVVEAMNKIFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=699946 M5C72_RS10050 WP_076613583.1 1972972..1974342(-) (radA) [Companilactobacillus allii strain WiKim39]
TTGGCTAAATCAAAATCAAAATTCGTTTGTCAAAACTGTGGCTACGTTTCACCAAAATACTTGGGACGTTGTCCTAATTG
TGGTTCATGGAACCAAATGGTGGAAGAAGTAGAGCACGTTGAAACAGCTCAAGCTACACCAAGCCGTAGAACAAGCGATG
TTACATCTAGACCTATCAAAATCAATGATGTTTCATTCGAAAAAGAAGCTCGTGTTAAAACTGATATGTCTGAATTGAAT
CGAGTACTCGGTGGAGGAATCGTTCCTGGATCACTTATACTTATAGGTGGTGATCCTGGTATTGGTAAGTCAACTTTATT
GATGCAAGTTTCGGGACAACTCCAAAAAACTGGAGGAAAGGTATTATACGTTTCTGGTGAAGAGAGTGCATCTCAGATAA
AGATGCGTGCTGATAGATTGGGCGTTAGTGGGGATGAATTGTATGTGTATCCTCAAACAGATATGAGTTATATTCGTGAT
CAGATCAATAATATGGACCCTGATTATTTAGTGATAGATTCTATTCAAACTATGGATGAACCAGAAATATCCTCCGCAGT
TGGTAGTATCTCTCAAGTTAGAGAAGTTACTGCAGAATTGATGAATATTGCTAAACAACAAAATATTACAGTATTTGTTG
TTGGACATGTTACAAAGGGCGGTGCCATCGCTGGTCCTAAAATACTGGAACATATGGTTGATACTGTTCTATACTTTGAA
GGTGACACACATCATAGTTACCGCATATTGCGTTCAGTTAAGAACCGTTTTGGTTCAACAAATGAGATTGGTATTTTTGA
AATGCAGACTAAAGGACTTGTTGAAGTGGCTAATCCATCTGAAATATTCCTTGAGGAACGTTTGAAAGATGCTAATGGTT
CTGCCGTTGTTGTTTCAATGGAAGGAACACGTCCTATTTTGGTTGAAATTCAATCGTTGATTACTCCAACTATTTTTGGA
AATGCCAAAAGAACCGCTACTGGATTGGACCACAATCGAGTATCTGTTATAATGGCTGTCTTAGAAAAACGTGGGAATTT
AATGCTTCAAAACCAAGATGCTTATTTGAAATCAACTGGTGGTGTAAAATTAGATGAACCAGCAATTGATCTAGCACTAG
TAATGTCTATTGCGTCGAGTTATAAAAATATTGGGATTCCTGCTACTGACTGTTTTGTCGGCGAGGTAGGATTAACTGGT
GAAGTTCGTCGTGTGAATAGAATTGATCAACGTGTGAATGAAGCTGAAAAATTAGGATTCAAGCGTATTTTTGTTCCTAA
GAATAACTTAGGCGACTGGACAAAGAATAATAAAATTGAAATTATTGGTGTTAATACAGTTGTGGAAGCTATGAATAAGA
TATTTAATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-429)

AAA domain (AAA_25)

(57-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8PZW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

65.934

99.781

0.658
  radA Streptococcus pneumoniae Rx1

65.934

99.781

0.658
  radA Streptococcus pneumoniae D39

65.934

99.781

0.658
  radA Streptococcus pneumoniae R6

65.934

99.781

0.658
  radA Streptococcus pneumoniae TIGR4

65.934

99.781

0.658
  radA Streptococcus mitis SK321

65.934

99.781

0.658
  radA Bacillus subtilis subsp. subtilis str. 168

63.158

100

0.632