Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FJI53_RS17420 Genome accession   NZ_AP023237
Coordinates   3610346..3610951 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain F070     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3605346..3615951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJI53_RS17400 aes 3605383..3606342 (+) 960 WP_000801846.1 acetyl esterase -
  FJI53_RS17405 hemH 3606339..3607301 (-) 963 WP_001250088.1 ferrochelatase -
  FJI53_RS17410 adk 3607537..3608181 (-) 645 WP_001220233.1 adenylate kinase -
  FJI53_RS17415 htpG 3608362..3610236 (-) 1875 WP_000678213.1 molecular chaperone HtpG -
  FJI53_RS17420 recR 3610346..3610951 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FJI53_RS17425 ybaB 3610951..3611280 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FJI53_RS17430 dnaX 3611333..3613264 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  FJI53_RS17435 apt 3613393..3613944 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FJI53_RS17440 ybaN 3614097..3614474 (-) 378 WP_001188905.1 DUF454 family protein -
  FJI53_RS17445 priC 3614544..3615071 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  FJI53_RS17450 rsmS 3615085..3615246 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=69991 FJI53_RS17420 WP_001195025.1 3610346..3610951(-) (recR) [Escherichia coli strain F070]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=69991 FJI53_RS17420 WP_001195025.1 3610346..3610951(-) (recR) [Escherichia coli strain F070]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment