Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   SA27298_RS07560 Genome accession   NZ_AP018548
Coordinates   1548265..1549332 (-) Length   355 a.a.
NCBI ID   WP_003026176.1    Uniprot ID   A0A2I1UTR6
Organism   Streptococcus anginosus strain CCUG 27928     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1543265..1554332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA27298_RS07540 (SA27298_1540) - 1543887..1545344 (+) 1458 WP_003031721.1 sucrose-6-phosphate hydrolase -
  SA27298_RS07545 (SA27298_1541) - 1545325..1546290 (+) 966 WP_003031743.1 LacI family DNA-binding transcriptional regulator -
  SA27298_RS07550 (SA27298_1542) - 1546364..1547188 (-) 825 WP_003031797.1 Cof-type HAD-IIB family hydrolase -
  SA27298_RS07555 (SA27298_1543) amiF 1547331..1548254 (-) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  SA27298_RS07560 (SA27298_1544) amiE 1548265..1549332 (-) 1068 WP_003026176.1 ABC transporter ATP-binding protein Regulator
  SA27298_RS07565 (SA27298_1545) amiD 1549341..1550267 (-) 927 WP_003031796.1 oligopeptide ABC transporter permease OppC Regulator
  SA27298_RS07570 (SA27298_1546) amiC 1550267..1551763 (-) 1497 WP_003031736.1 ABC transporter permease Regulator
  SA27298_RS07575 (SA27298_1547) amiA3 1552139..1554118 (-) 1980 WP_018543580.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39702.39 Da        Isoelectric Point: 4.7502

>NTDB_id=69991 SA27298_RS07560 WP_003026176.1 1548265..1549332(-) (amiE) [Streptococcus anginosus strain CCUG 27928]
MTQEKNVILTARDIVVEFDVRDKVLTAIRGVSLDLIEGEVLALVGESGSGKSVLTKTFTGMLEENGRVAQGTIDYRGQDL
TKLKSNKDWEPIRGVKIATIFQDPMTSLDPINTIGSQITEVIIKHQKKTPKEAKEMAVDYMNKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQHEYEFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYSHLQGDAFALRSDYAMEIDFEEKPPQIYVTDTHWAK
TWLLHENAPKVNKPAVIDDLHEKISSKMGFAHLDA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=69991 SA27298_RS07560 WP_003026176.1 1548265..1549332(-) (amiE) [Streptococcus anginosus strain CCUG 27928]
ATGACACAAGAAAAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGATAAAGTCTTAACAGC
CATTCGTGGTGTTTCGCTTGACCTTATCGAAGGTGAGGTTCTTGCACTTGTAGGAGAATCTGGTTCTGGTAAGTCTGTTT
TGACAAAGACATTTACAGGAATGTTAGAGGAAAATGGTCGAGTTGCTCAAGGAACGATTGATTACCGTGGACAAGATTTG
ACAAAATTGAAGTCTAATAAAGATTGGGAACCTATACGCGGTGTTAAAATTGCAACAATCTTCCAAGATCCGATGACGAG
TTTGGACCCTATTAACACAATTGGTAGCCAAATTACAGAAGTGATTATCAAGCATCAAAAGAAAACGCCAAAAGAAGCAA
AAGAAATGGCTGTTGACTATATGAATAAGGTCGGCATTCCTGATGCTGAAAAGCGTTTTAATGAATACCCATTCCAATAT
TCAGGAGGAATGCGTCAACGGATTGTTATCGCTATTGCGCTTGCTTGTCGACCTGATATCCTTATCTGTGATGAACCAAC
GACAGCGCTTGACGTTACGATTCAGGCACAAATCATTGATTTGTTGAAATCTTTGCAACACGAGTATGAATTCACAACTA
TTTTTATCACCCACGACCTGGGAGTGGTAGCAAGTATTGCAGATAAGGTTGCGGTTATGTATGCTGGTGAAATCGTTGAA
TACGGAACAGTAGAAGAAGTCTTTTACGATCCACGTCATCCTTACACTTGGAGTTTGTTATCTAGTCTACCTCAGTTGGC
AGATGATAAGGGTGAGTTGTATTCAATTCCTGGAACGCCGCCATCTCTCTATTCACATTTACAAGGAGATGCATTTGCCT
TGCGTTCAGATTATGCTATGGAAATTGATTTTGAAGAGAAACCGCCTCAAATTTATGTAACGGATACCCACTGGGCAAAA
ACATGGTTGTTACATGAGAATGCTCCAAAAGTGAATAAGCCAGCTGTTATTGATGATTTACACGAAAAAATTAGCTCAAA
AATGGGCTTTGCCCATTTAGACGCCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2I1UTR6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.119

99.437

0.856

  amiE Streptococcus thermophilus LMG 18311

84.703

99.437

0.842

  amiE Streptococcus thermophilus LMD-9

84.703

99.437

0.842

  oppD Streptococcus mutans UA159

56.215

99.718

0.561


Multiple sequence alignment