Detailed information NTG0699819

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NG743_RS02360
• Genome accession: NZ_CP099464
• Coordinates: 543032..544570 (-)
• Length: 512 a.a.
• NCBI ID: WP_027400699.1
• Uniprot ID: -
• Organism: Dolichospermum heterosporum TAC447 strain NIES-1697
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 538032..549570

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NG743_RS02350 (NG743_02340)	-	540945..541883 (+)	939	WP_027400701.1	phosphoribulokinase	-
NG743_RS02355 (NG743_02345)	radC	542234..542965 (+)	732	WP_027400700.1	DNA repair protein RadC	-
NG743_RS02360 (NG743_02350)	radA	543032..544570 (-)	1539	WP_027400699.1	DNA repair protein RadA	Machinery gene
NG743_RS02365 (NG743_02355)	rpaB	544741..545469 (+)	729	WP_015079764.1	response regulator transcription factor RpaB	-
NG743_RS02370 (NG743_02360)	-	545681..546322 (+)	642	WP_257121436.1	cofactor assembly of complex C subunit B	-
NG743_RS02375 (NG743_02365)	-	546296..546457 (-)	162	WP_257121438.1	hypothetical protein	-
NG743_RS02380 (NG743_02370)	-	546463..546981 (+)	519	WP_027400697.1	DUF456 domain-containing protein	-
NG743_RS02385 (NG743_02375)	nblB	547059..547715 (-)	657	WP_257121439.1	phycobilisome degradation protein NblB	-
NG743_RS02390 (NG743_02380)	-	548416..548874 (-)	459	WP_257121440.1	CBS domain-containing protein	-

Sequence

Protein

• Length: 512 a.a.
• Molecular weight: 55104.02 Da
• Isoelectric Point: 5.0773

>NTDB_id=699819 NG743_RS02360 WP_027400699.1 543032..544570(-) (radA) [Dolichospermum heterosporum TAC447 strain NIES-1697]
MAKPKTIYICSNCAAEFSQWFGKCSNCDTYDSLVEQNISSFLGDIPGRGGVGNWQAGGHSKSHGKPAKARSSLTFDQISD
RQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGMSKPPL
IVKEDHQNKDPEAPVTNPQQPIDPDSIGADLYILPETDLEEILREIDSLKPNVAVIDSIQTVFLPALTSAPGSVAQVREC
TAALMKVAKHEDITMLIVGHVTKEGTIAGPRVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVSQGLREV
DNPSELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGIDYNRLVQILAVLEKRVGIPMSKLDSYV
ASAGGLNVEEPAVDLGIAVAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPEIGI
EILPVGKVIDAIIAAVPHQELTEEDLEPDGDE

Nucleotide

• Length: 1539 bp

>NTDB_id=699819 NG743_RS02360 WP_027400699.1 543032..544570(-) (radA) [Dolichospermum heterosporum TAC447 strain NIES-1697]
ATGGCAAAGCCAAAAACCATTTATATCTGTAGTAATTGTGCAGCGGAATTCTCCCAATGGTTCGGAAAATGTTCAAATTG
TGACACTTACGATTCTTTAGTTGAGCAGAATATTAGCTCTTTTCTGGGGGATATACCTGGCCGGGGTGGGGTGGGAAATT
GGCAAGCTGGAGGTCATAGTAAGTCTCATGGTAAACCAGCTAAAGCTAGATCATCTCTGACTTTTGACCAAATTAGCGAT
CGCCAAATTGCTCGTTGGGAGTCCGGTTATGGCGAATTAGATCGAGTTTTAGGCGGTGGTGTTGTTCCCGGTTCAATGGT
ATTAATTGGTGGTGATCCTGGTATTGGTAAATCTACTTTACTACTACAAGTATCTAACCAATTAGCACAAAAATATCGTA
TTCTCTATGTTACAGGAGAAGAGTCTGGACAACAAGTAAAATTGCGTGCTTCTCGCTTGGGAATGTCCAAACCTCCTCTT
ATCGTCAAAGAAGATCATCAAAACAAAGATCCGGAAGCACCAGTGACAAATCCTCAACAACCTATAGATCCTGACAGTAT
AGGCGCGGATCTATATATATTACCAGAAACGGATTTAGAAGAAATTTTACGAGAAATAGACTCCTTAAAGCCCAATGTGG
CAGTAATAGATAGTATTCAAACCGTGTTTTTACCAGCTTTGACATCAGCACCGGGTTCAGTGGCTCAAGTCAGGGAATGT
ACCGCAGCCTTGATGAAGGTGGCAAAACATGAAGATATTACGATGTTAATTGTTGGTCATGTTACCAAAGAAGGCACGAT
TGCCGGACCGAGAGTATTAGAACACTTAGTTGATACTGTATTGTATTTTGAAGGCGATCGCTTTGCTTCCCACAGATTAT
TAAGAACTGTAAAAAACCGTTTCGGAGCAACACACGAAATTGGTATATTTGAAATGGTGTCTCAAGGATTAAGGGAAGTT
GATAATCCTTCTGAATTATTTTTAGGCAATCGTGATGATCCGGCTCCAGGTACAGCTATTGTAGTAGCTTGTGAAGGAAC
AAGACCAATAGTAGTGGAATTACAAGCTTTAGTTAGCCCTACAAGTTATCCATCTCCTCGCCGAGCAGGTACAGGCATAG
ATTACAATCGGTTAGTGCAAATACTCGCCGTATTAGAAAAGCGTGTGGGTATTCCTATGTCCAAATTAGATTCCTATGTT
GCTTCTGCGGGGGGATTAAATGTAGAAGAACCAGCAGTAGATTTAGGAATTGCCGTTGCCATAGTTGCCAGTTTCCGCGA
TCGCATCGTTGATCCTGGTACAGTCTTAATTGGAGAAGTAGGATTAGGGGGACAGGTGCGATCGGTTTCCCAAATGGAAC
TACGATTAAAGGAAGCAGCAAAACTGGGATTTAAAAGAGCGATCGTTCCTAAAGGCACAAAATTTCCTGAAATTGGTATA
GAGATATTACCAGTAGGTAAAGTCATAGATGCAATTATTGCGGCTGTTCCTCATCAGGAGTTAACAGAGGAAGATTTAGA
ACCTGATGGGGATGAATAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (406-471)

• KaiC (ATPase) (89-300)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.398	97.266	0.48
radA	Streptococcus mitis SK321	46.362	93.945	0.436
radA	Streptococcus pneumoniae Rx1	46.362	93.945	0.436
radA	Streptococcus pneumoniae D39	46.362	93.945	0.436
radA	Streptococcus pneumoniae R6	46.362	93.945	0.436
radA	Streptococcus pneumoniae TIGR4	46.362	93.945	0.436
radA	Streptococcus mitis NCTC 12261	46.362	93.945	0.436