Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NF199_RS16790 Genome accession   NZ_CP099460
Coordinates   3391417..3392802 (-) Length   461 a.a.
NCBI ID   WP_032876163.1    Uniprot ID   -
Organism   Bacillus velezensis strain E     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3386417..3397802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF199_RS16755 flgL 3386592..3387509 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  NF199_RS16760 flgK 3387521..3389038 (-) 1518 WP_265605969.1 flagellar hook-associated protein FlgK -
  NF199_RS16765 - 3389054..3389536 (-) 483 WP_032876168.1 flagellar protein FlgN -
  NF199_RS16770 flgM 3389551..3389817 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NF199_RS16775 - 3389887..3390306 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  NF199_RS16780 comFC 3390380..3391069 (-) 690 WP_265606347.1 phosphoribosyltransferase family protein Machinery gene
  NF199_RS16785 - 3391075..3391359 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  NF199_RS16790 comFA 3391417..3392802 (-) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  NF199_RS16795 - 3392911..3393759 (-) 849 WP_032876160.1 DegV family protein -
  NF199_RS16800 degU 3393857..3394546 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NF199_RS16805 degS 3394623..3395786 (-) 1164 WP_265605970.1 two-component sensor histidine kinase DegS Regulator
  NF199_RS16810 - 3396009..3396656 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52474.86 Da        Isoelectric Point: 9.9925

>NTDB_id=699808 NF199_RS16790 WP_032876163.1 3391417..3392802(-) (comFA) [Bacillus velezensis strain E]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINGFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASFAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVVIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQLQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVIMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=699808 NF199_RS16790 WP_032876163.1 3391417..3392802(-) (comFA) [Bacillus velezensis strain E]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACGGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTTTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTTCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTCTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCGTGATAATAGATGAAGTAGATGCGTTTCCTTTTTCCGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACTGATTGGGTT
TGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCAGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCATCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATTGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(330-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627
  comFA Latilactobacillus sakei subsp. sakei 23K

38.182

95.445

0.364