Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NF199_RS12925 Genome accession   NZ_CP099460
Coordinates   2646947..2647699 (-) Length   250 a.a.
NCBI ID   WP_265605850.1    Uniprot ID   -
Organism   Bacillus velezensis strain E     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2641947..2652699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF199_RS12900 mreC 2642386..2643249 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  NF199_RS12905 mreB 2643280..2644293 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  NF199_RS12910 radC 2644385..2645077 (-) 693 Protein_2499 RadC family protein -
  NF199_RS12915 - 2645109..2645678 (-) 570 WP_032873810.1 nucleoside triphosphate pyrophosphatase -
  NF199_RS12920 - 2645819..2646820 (-) 1002 WP_032873809.1 SPOR domain-containing protein -
  NF199_RS12925 comC 2646947..2647699 (-) 753 WP_265605850.1 A24 family peptidase Machinery gene
  NF199_RS12930 - 2647839..2649131 (-) 1293 WP_032873806.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NF199_RS12935 - 2649190..2651832 (-) 2643 WP_265605852.1 valine--tRNA ligase -
  NF199_RS12940 - 2652285..2652476 (+) 192 WP_007612879.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27333.10 Da        Isoelectric Point: 9.7424

>NTDB_id=699797 NF199_RS12925 WP_265605850.1 2646947..2647699(-) (comC) [Bacillus velezensis strain E]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCARARGRLGKKRPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=699797 NF199_RS12925 WP_265605850.1 2646947..2647699(-) (comC) [Bacillus velezensis strain E]
GTGCTTTTGATTCTGTTTTTTCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCTT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGCATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGCATGTGCGCCCGAGCCCGGGGCAGGCTTGGTA
AAAAGCGACCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58