Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NF199_RS12020 Genome accession   NZ_CP099460
Coordinates   2486609..2487376 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain E     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2481609..2492376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF199_RS12000 - 2481811..2482623 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  NF199_RS12005 ccpN 2482649..2483287 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  NF199_RS12010 glyS 2483388..2485427 (-) 2040 WP_032873973.1 glycine--tRNA ligase subunit beta -
  NF199_RS12015 glyQ 2485420..2486307 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  NF199_RS12020 recO 2486609..2487376 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  NF199_RS12025 - 2487413..2487556 (-) 144 WP_007408286.1 YqzL family protein -
  NF199_RS12030 era 2487712..2488617 (-) 906 WP_007408285.1 GTPase Era -
  NF199_RS12035 - 2488598..2489008 (-) 411 WP_003152976.1 cytidine deaminase -
  NF199_RS12040 - 2489132..2489506 (-) 375 WP_015240233.1 diacylglycerol kinase family protein -
  NF199_RS12045 ybeY 2489487..2489960 (-) 474 WP_032873971.1 rRNA maturation RNase YbeY -
  NF199_RS12050 - 2489961..2492093 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=699792 NF199_RS12020 WP_007408287.1 2486609..2487376(-) (recO) [Bacillus velezensis strain E]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=699792 NF199_RS12020 WP_007408287.1 2486609..2487376(-) (recO) [Bacillus velezensis strain E]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89