Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NF199_RS11515 Genome accession   NZ_CP099460
Coordinates   2401333..2402133 (-) Length   266 a.a.
NCBI ID   WP_265605823.1    Uniprot ID   -
Organism   Bacillus velezensis strain E     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2396333..2407133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF199_RS11485 - 2396874..2397506 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  NF199_RS11490 - 2397803..2397940 (+) 138 WP_014470646.1 hypothetical protein -
  NF199_RS11495 - 2398034..2399152 (+) 1119 WP_032874152.1 NADH-dependent flavin oxidoreductase -
  NF199_RS11500 - 2399279..2399491 (+) 213 WP_007408362.1 spore germination protein -
  NF199_RS11505 - 2399617..2399829 (+) 213 WP_014418351.1 spore germination protein -
  NF199_RS11510 alr 2400003..2401184 (+) 1182 WP_265605822.1 alanine racemase -
  NF199_RS11515 spo0A 2401333..2402133 (-) 801 WP_265605823.1 sporulation transcription factor Spo0A Regulator
  NF199_RS11520 spoIVB 2402414..2403694 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  NF199_RS11525 recN 2403858..2405588 (-) 1731 WP_032874060.1 DNA repair protein RecN Machinery gene
  NF199_RS11530 ahrC 2405620..2406069 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  NF199_RS11535 - 2406166..2407011 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29628.09 Da        Isoelectric Point: 5.9132

>NTDB_id=699782 NF199_RS11515 WP_265605823.1 2401333..2402133(-) (spo0A) [Bacillus velezensis strain E]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSGIIRDQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=699782 NF199_RS11515 WP_265605823.1 2401333..2402133(-) (spo0A) [Bacillus velezensis strain E]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCGTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCGGCATTATCCGCGACCAGCCGGAGCCAAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGACATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATTGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.757

100

0.951