Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NF199_RS07300 Genome accession   NZ_CP099460
Coordinates   1393335..1393619 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain E     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1388335..1398619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF199_RS07280 - 1389580..1390488 (+) 909 WP_032874760.1 ketopantoate reductase family protein -
  NF199_RS07285 - 1390518..1391750 (-) 1233 WP_265606255.1 aminopeptidase -
  NF199_RS07290 - 1391851..1391985 (-) 135 WP_003154559.1 protein YkpC -
  NF199_RS07295 mreBH 1392057..1393063 (-) 1007 Protein_1377 cell shape-determining protein MreBH -
  NF199_RS07300 abrB 1393335..1393619 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NF199_RS07305 - 1393792..1395096 (+) 1305 WP_032874761.1 ATP-binding protein -
  NF199_RS07310 - 1395098..1395925 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase -
  NF199_RS07315 ktrC 1395966..1396631 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  NF199_RS07320 ade 1396780..1398513 (+) 1734 WP_032874763.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=699775 NF199_RS07300 WP_003154557.1 1393335..1393619(+) (abrB) [Bacillus velezensis strain E]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=699775 NF199_RS07300 WP_003154557.1 1393335..1393619(+) (abrB) [Bacillus velezensis strain E]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543