Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NF199_RS00250 Genome accession   NZ_CP099460
Coordinates   45453..45743 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain E     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40453..50743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF199_RS00210 darA 40470..40799 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  NF199_RS00215 - 40812..41252 (+) 441 WP_265606056.1 YaaR family protein -
  NF199_RS00220 holB 41264..42253 (+) 990 WP_265606057.1 DNA polymerase III subunit delta' -
  NF199_RS00225 ricT 42256..43083 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  NF199_RS00230 yabA 43098..43457 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  NF199_RS00235 - 43518..44261 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NF199_RS00240 - 44248..44547 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  NF199_RS00245 rsmI 44522..45403 (+) 882 WP_032872176.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NF199_RS00250 abrB 45453..45743 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  NF199_RS00255 metG 46227..48218 (+) 1992 WP_022552471.1 methionine--tRNA ligase -
  NF199_RS00260 - 48295..49062 (+) 768 WP_032872179.1 TatD family hydrolase -
  NF199_RS00265 - 49197..50522 (+) 1326 WP_087920785.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=699751 NF199_RS00250 WP_169510469.1 45453..45743(-) (abrB) [Bacillus velezensis strain E]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=699751 NF199_RS00250 WP_169510469.1 45453..45743(-) (abrB) [Bacillus velezensis strain E]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979