Detailed information NTG0699724

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP63_RS12950
• Genome accession: NZ_CP115258
• Coordinates: 2838911..2839915 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F028
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2833911..2844915

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP63_RS12935 (PCP63_12925)	-	2834394..2835401 (+)	1008	WP_003098486.1	TolB family protein	-
PCP63_RS12940 (PCP63_12930)	mutS	2835527..2838094 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP63_RS12945 (PCP63_12935)	fdxA	2838161..2838484 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PCP63_RS12950 (PCP63_12940)	rpoS	2838911..2839915 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP63_RS12955 (PCP63_12945)	-	2840020..2840913 (-)	894	WP_329034966.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP63_RS12960 (PCP63_12950)	-	2840959..2841594 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP63_RS12965 (PCP63_12955)	surE	2841627..2842376 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP63_RS12970 (PCP63_12960)	truD	2842364..2843431 (-)	1068	WP_031633801.1	tRNA pseudouridine(13) synthase TruD	-
PCP63_RS12975 (PCP63_12965)	ispF	2843428..2843901 (-)	474	WP_096252759.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP63_RS12980 (PCP63_12970)	fghA	2843972..2844823 (-)	852	WP_009876912.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=699724 PCP63_RS12950 WP_003113871.1 2838911..2839915(-) (rpoS) [Pseudomonas aeruginosa strain F028]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=699724 PCP63_RS12950 WP_003113871.1 2838911..2839915(-) (rpoS) [Pseudomonas aeruginosa strain F028]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653