Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NG693_RS09885 Genome accession   NZ_CP099456
Coordinates   1965511..1966884 (+) Length   457 a.a.
NCBI ID   WP_046422640.1    Uniprot ID   -
Organism   Listeria monocytogenes strain L1436     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1960511..1971884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG693_RS09865 (NG693_09860) - 1960866..1961324 (+) 459 WP_003723894.1 CtsR family transcriptional regulator -
  NG693_RS09870 (NG693_09865) - 1961337..1961855 (+) 519 WP_003732822.1 UvrB/UvrC motif-containing protein -
  NG693_RS09875 (NG693_09870) - 1961852..1962874 (+) 1023 WP_010989379.1 protein arginine kinase -
  NG693_RS09880 (NG693_09875) - 1962903..1965365 (+) 2463 WP_003723897.1 ATP-dependent Clp protease ATP-binding subunit -
  NG693_RS09885 (NG693_09880) radA 1965511..1966884 (+) 1374 WP_046422640.1 DNA repair protein RadA Machinery gene
  NG693_RS09890 (NG693_09885) - 1967018..1968091 (+) 1074 WP_003723899.1 PIN/TRAM domain-containing protein -
  NG693_RS09895 (NG693_09890) ispD 1968111..1968809 (+) 699 WP_010989381.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NG693_RS09900 (NG693_09895) ispF 1968802..1969275 (+) 474 WP_009930888.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NG693_RS09905 (NG693_09900) gltX 1969294..1970769 (+) 1476 WP_003732826.1 glutamate--tRNA ligase -
  NG693_RS09910 (NG693_09905) epsC 1971167..1971781 (+) 615 WP_003726845.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50037.71 Da        Isoelectric Point: 7.9038

>NTDB_id=699702 NG693_RS09885 WP_046422640.1 1965511..1966884(+) (radA) [Listeria monocytogenes strain L1436]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVCLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=699702 NG693_RS09885 WP_046422640.1 1965511..1966884(+) (radA) [Listeria monocytogenes strain L1436]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCAAAATGGATGGGAAAATGTCC
GAATTGCAACGAGTGGAATCAGATGGTAGAAGCCTTAGAACCGTCAAAAAAATCACGCTCAGCTTTCAATCATACAGGAG
AGCCTTCAAAAGCGACTCCAATTACTCAAATAGCAAGTGAAACAGAAAAACGAGTTGAAACAAATATGCCCGAGTTAAAT
AGAGTTCTTGGTGGCGGTGTGGTTCCTGGGTCTATGGTACTTGTCGGAGGAGACCCTGGTATTGGTAAATCAACATTGTT
ATTACAAGTATCAGCGCAACTCACACTTACAAATAAAAAAGTATTGTATATCTCAGGAGAAGAATCAATCAAACAAACGA
AGCTACGGGCAGAACGCTTGCAAGTTTCGGGAGATAATTTATATGTGTATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTAAAACCTGATTTTGTAGTCATTGACTCTATTCAGACTGTTTATCATCCTGATGTTACAAGTGCCGC
AGGGAGTGTTTCTCAAGTTAGGGAATGTACAGCGACATTGATGCGAATTGCTAAAATGCAAAACATCGCTATCTTTATTG
TTGGGCATGTAACTAAGGAAGGTGCTATTGCGGGACCGCGCCTATTAGAACATATGGTTGATACTGTACTCTATTTTGAA
GGGGAGCGTCACCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAACGAAATGGGTATATTTGA
AATGCGAGATGTAGGACTTGTTGAAGTTGCTAATCCTTCCGAGGTATTCTTGGAAGAACGTCTTGAAGGCGCTTCAGGCT
CAACGGTTGTAGCTTCTATGGAAGGAACTCGCCCCGTCCTTGTGGAAATACAAGCGCTTGTTTCGCCAACGATGTTCGGT
AATGCTAAGCGAATGGCGACGGGAATAGACTACAACAAAGTTTCGCTAATTATGGCTGTTTTAGAAAAGCGAGTATGTTT
AATGTTGCAAAACCAAGATGCTTATTTGAAAGCGGCGGGCGGGGTTAAATTGGATGAGCCTGCAGTGGATTTGGCGGTTG
CAGTCAGTGTTGCATCTAGTTATCGTGATAAACCAACAAGAAGTACGGACTGCTTTATTGGGGAACTTGGACTTACAGGT
GAAATTCGTCGTGTAGCAAGAATTGAACAACGCGTACAAGAAGCAGCAAAACTTGGCTTTAAGCGAATTTTTATTCCTAA
AAATAACGAAGGTAATTGGAAAATACCGAAAGACGTGCAAGTGGTTGGGGTGGAAACGATTGGAGAAGCTTTGAAGAAAG
CTTTACCAGATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.202

99.781

0.681
  radA Streptococcus mitis NCTC 12261

65.275

99.562

0.65
  radA Streptococcus pneumoniae D39

65.044

98.906

0.643
  radA Streptococcus pneumoniae TIGR4

65.044

98.906

0.643
  radA Streptococcus pneumoniae R6

65.044

98.906

0.643
  radA Streptococcus pneumoniae Rx1

65.044

98.906

0.643
  radA Streptococcus mitis SK321

64.823

98.906

0.641