Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NE411_RS20450 Genome accession   NZ_CP099450
Coordinates   3892150..3892434 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus pacificus strain ANSB901     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3887150..3897434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE411_RS20415 (NE411_20370) tmk 3887304..3887930 (+) 627 WP_000677228.1 dTMP kinase -
  NE411_RS20420 (NE411_20375) holB 3887966..3888949 (+) 984 WP_000169574.1 DNA polymerase III subunit delta' -
  NE411_RS20425 (NE411_20380) - 3888955..3889782 (+) 828 WP_000272429.1 PSP1 domain-containing protein -
  NE411_RS20430 (NE411_20385) yabA 3889797..3890147 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  NE411_RS20435 (NE411_20390) - 3890268..3891008 (+) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NE411_RS20440 (NE411_20395) - 3890995..3891285 (+) 291 WP_275064533.1 GIY-YIG nuclease family protein -
  NE411_RS20445 (NE411_20400) rsmI 3891254..3892129 (+) 876 WP_000267806.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NE411_RS20450 (NE411_20405) abrB 3892150..3892434 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NE411_RS20455 (NE411_20410) metG 3892952..3894934 (+) 1983 WP_000159678.1 methionine--tRNA ligase -
  NE411_RS20460 (NE411_20415) - 3895100..3895867 (+) 768 WP_000895830.1 TatD family hydrolase -
  NE411_RS20465 (NE411_20420) rnmV 3896081..3896638 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=699607 NE411_RS20450 WP_000843036.1 3892150..3892434(-) (abrB) [Bacillus pacificus strain ANSB901]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=699607 NE411_RS20450 WP_000843036.1 3892150..3892434(-) (abrB) [Bacillus pacificus strain ANSB901]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCGATTGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851