Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NE411_RS20155 Genome accession   NZ_CP099450
Coordinates   3837926..3838438 (-) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus pacificus strain ANSB901     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3832926..3843438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE411_RS20135 (NE411_20090) rplI 3834136..3834582 (-) 447 WP_000864231.1 50S ribosomal protein L9 -
  NE411_RS20140 (NE411_20095) - 3834579..3836552 (-) 1974 WP_001113892.1 DHH family phosphoesterase -
  NE411_RS20145 (NE411_20100) - 3836631..3837512 (-) 882 WP_079995164.1 YybS family protein -
  NE411_RS20150 (NE411_20105) rpsR 3837647..3837880 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  NE411_RS20155 (NE411_20110) ssbA 3837926..3838438 (-) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  NE411_RS20160 (NE411_20115) rpsF 3838465..3838755 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  NE411_RS20165 (NE411_20120) ychF 3838947..3840047 (-) 1101 WP_000524665.1 redox-regulated ATPase YchF -
  NE411_RS20170 (NE411_20125) - 3840163..3840360 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  NE411_RS20175 (NE411_20130) - 3840381..3841262 (-) 882 WP_000365102.1 mechanosensitive ion channel family protein -
  NE411_RS20180 (NE411_20135) yyaC 3841522..3842118 (+) 597 WP_001020717.1 spore protease YyaC -
  NE411_RS20185 (NE411_20140) spo0J 3842139..3842990 (-) 852 WP_001051838.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=699604 NE411_RS20155 WP_000981966.1 3837926..3838438(-) (ssbA) [Bacillus pacificus strain ANSB901]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=699604 NE411_RS20155 WP_000981966.1 3837926..3838438(-) (ssbA) [Bacillus pacificus strain ANSB901]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGCGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394