Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FJI53_RS05545 Genome accession   NZ_AP023237
Coordinates   1140365..1140880 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain F070     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1135365..1145880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJI53_RS05500 csrA 1135952..1136137 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FJI53_RS05530 yqaB 1137595..1138161 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FJI53_RS05535 yqaA 1138158..1138586 (+) 429 WP_001287457.1 YqaA family protein -
  FJI53_RS05540 gshA 1138659..1140215 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  FJI53_RS05545 luxS 1140365..1140880 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  FJI53_RS05550 emrB 1140944..1142482 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FJI53_RS05555 emrA 1142499..1143671 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FJI53_RS05560 emrR 1143798..1144328 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FJI53_RS05565 ygaH 1144419..1144754 (-) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  FJI53_RS05570 ygaZ 1144744..1145481 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=69960 FJI53_RS05545 WP_001130207.1 1140365..1140880(+) (luxS) [Escherichia coli strain F070]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=69960 FJI53_RS05545 WP_001130207.1 1140365..1140880(+) (luxS) [Escherichia coli strain F070]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment