Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NE411_RS03360 Genome accession   NZ_CP099450
Coordinates   638432..638719 (+) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus pacificus strain ANSB901     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 633432..643719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE411_RS03340 (NE411_03330) - 634606..634803 (+) 198 WP_014893815.1 DUF4083 domain-containing protein -
  NE411_RS03345 (NE411_03335) - 634835..635296 (+) 462 WP_014893814.1 NUDIX hydrolase -
  NE411_RS03350 (NE411_03340) nadE 635345..636163 (-) 819 WP_000174882.1 ammonia-dependent NAD(+) synthetase -
  NE411_RS03355 (NE411_03345) - 636435..638315 (+) 1881 WP_046646899.1 FtsX-like permease family protein -
  NE411_RS03360 (NE411_03350) abrB 638432..638719 (+) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  NE411_RS03365 (NE411_03355) - 639032..639982 (+) 951 WP_001089044.1 serine protease -
  NE411_RS03370 (NE411_03360) - 640023..640331 (-) 309 WP_001259918.1 ArsR/SmtB family transcription factor -
  NE411_RS03375 (NE411_03365) - 640439..641374 (+) 936 WP_000877939.1 aldo/keto reductase -
  NE411_RS03380 (NE411_03370) - 641544..641807 (+) 264 Protein_672 MFS transporter -
  NE411_RS03385 (NE411_03375) - 642001..642225 (-) 225 WP_000162606.1 hypothetical protein -
  NE411_RS03390 (NE411_03380) - 642310..642657 (-) 348 WP_000426318.1 DUF4257 domain-containing protein -
  NE411_RS03395 (NE411_03385) - 642851..643366 (+) 516 Protein_675 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=699579 NE411_RS03360 WP_000648331.1 638432..638719(+) (abrB) [Bacillus pacificus strain ANSB901]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=699579 NE411_RS03360 WP_000648331.1 638432..638719(+) (abrB) [Bacillus pacificus strain ANSB901]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516