Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NE411_RS00140 Genome accession   NZ_CP099450
Coordinates   26106..26429 (-) Length   107 a.a.
NCBI ID   WP_000578887.1    Uniprot ID   -
Organism   Bacillus pacificus strain ANSB901     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 21106..31429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE411_RS00115 (NE411_00115) - 21240..22526 (+) 1287 WP_000247008.1 D-alanyl-D-alanine carboxypeptidase family protein -
  NE411_RS00120 (NE411_00120) sipW 22719..23288 (+) 570 WP_000767807.1 signal peptidase I SipW -
  NE411_RS00125 (NE411_00125) - 23349..23939 (+) 591 WP_000172844.1 TasA family protein -
  NE411_RS00130 (NE411_00130) - 24096..25016 (+) 921 WP_000917482.1 DUF4047 domain-containing protein -
  NE411_RS00135 (NE411_00135) calY 25441..26031 (+) 591 WP_000053726.1 biofilm matrix protein CalY -
  NE411_RS00140 (NE411_00140) sinR 26106..26429 (-) 324 WP_000578887.1 helix-turn-helix domain-containing protein Regulator
  NE411_RS00145 (NE411_00145) - 26509..26643 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  NE411_RS00150 (NE411_00150) inhA1 26985..29375 (+) 2391 WP_000038914.1 M6 family metalloprotease immune inhibitor InhA1 -
  NE411_RS00155 (NE411_00155) - 29548..30915 (+) 1368 WP_275064541.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12387.20 Da        Isoelectric Point: 8.5748

>NTDB_id=699576 NE411_RS00140 WP_000578887.1 26106..26429(-) (sinR) [Bacillus pacificus strain ANSB901]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTRENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=699576 NE411_RS00140 WP_000578887.1 26106..26429(-) (sinR) [Bacillus pacificus strain ANSB901]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAGGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692