Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP13_RS18330 Genome accession   NZ_CP115256
Coordinates   3913876..3914205 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain F030     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3908876..3919205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP13_RS18315 (PCP13_18320) - 3909576..3910535 (+) 960 WP_004350973.1 UDP-glucose 4-epimerase family protein -
  PCP13_RS18320 (PCP13_18325) - 3910532..3911557 (+) 1026 WP_009313766.1 MraY family glycosyltransferase -
  PCP13_RS18325 (PCP13_18330) - 3911688..3913685 (+) 1998 WP_009313767.1 polysaccharide biosynthesis protein -
  PCP13_RS18330 (PCP13_18335) comEA/comE1 3913876..3914205 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  PCP13_RS18340 (PCP13_18345) - 3914422..3915618 (-) 1197 WP_263888980.1 amino acid aminotransferase -
  PCP13_RS18345 (PCP13_18350) uvrB 3915806..3917818 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=699558 PCP13_RS18330 WP_003138486.1 3913876..3914205(+) (comEA/comE1) [Pseudomonas aeruginosa strain F030]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=699558 PCP13_RS18330 WP_003138486.1 3913876..3914205(+) (comEA/comE1) [Pseudomonas aeruginosa strain F030]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385