Detailed information NTG0699456

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP69_RS17955
• Genome accession: NZ_CP115255
• Coordinates: 3857176..3858180 (+)
• Length: 334 a.a.
• NCBI ID: WP_003143264.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F031
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3852176..3863180

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP69_RS17925 (PCP69_17930)	fghA	3852268..3853119 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PCP69_RS17930 (PCP69_17935)	ispF	3853190..3853663 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP69_RS17935 (PCP69_17940)	truD	3853660..3854727 (+)	1068	WP_034001159.1	tRNA pseudouridine(13) synthase TruD	-
PCP69_RS17940 (PCP69_17945)	surE	3854715..3855464 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP69_RS17945 (PCP69_17950)	-	3855497..3856132 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP69_RS17950 (PCP69_17955)	-	3856178..3857071 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP69_RS17955 (PCP69_17960)	rpoS	3857176..3858180 (+)	1005	WP_003143264.1	RNA polymerase sigma factor RpoS	Regulator
PCP69_RS17960 (PCP69_17965)	fdxA	3858607..3858930 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP69_RS17965 (PCP69_17970)	mutS	3858997..3861564 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP69_RS17970 (PCP69_17975)	-	3861690..3862697 (-)	1008	WP_113886799.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38254.43 Da
• Isoelectric Point: 5.0507

>NTDB_id=699456 PCP69_RS17955 WP_003143264.1 3857176..3858180(+) (rpoS) [Pseudomonas aeruginosa strain F031]
MALKKEGPEFDRDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=699456 PCP69_RS17955 WP_003143264.1 3857176..3858180(+) (rpoS) [Pseudomonas aeruginosa strain F031]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCGCGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.381	83.234	0.611